SMTL ID : 2e8v.1

S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with product GGPP (P21)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x GRG: GERANYLGERANYL DIPHOSPHATE(Non-covalent)

GRG.1: 18 residues within 4Å: Chain A: G.40, K.41, R.44, L.72, H.73, S.76, L.77, I.79, D.80, R.90, Y.112, L.140, L.143, H.144, Q.147, K.174, Y.210, Q.211 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:L.77, A:I.79, A:Y.112, A:L.140, A:L.143, A:L.143, A:Q.147, A:Q.147, A:Y.210 Hydrogen bonds: A:K.41, A:Y.210, A:Y.210 Water bridges: A:G.40, A:G.40, A:K.41, A:K.41, A:K.41, A:K.41, A:R.44, A:R.44 Salt bridges: A:K.41, A:K.41, A:R.44, A:H.73, A:H.73, A:R.90 GRG.2: 19 residues within 4Å: Chain B: G.40, K.41, R.44, L.72, H.73, S.76, L.77, I.79, D.80, R.90, Y.112, L.140, L.143, H.144, Q.147, K.174, T.175, Y.210, Q.211 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:L.77, B:I.79, B:D.80, B:Y.112, B:L.140, B:L.143, B:L.143, B:Q.147, B:Y.210 Hydrogen bonds: B:K.41, B:Y.210, B:Y.210 Water bridges: B:N.42, B:N.42, B:R.44, B:R.44, B:D.214 Salt bridges: B:R.44, B:H.73, B:H.73, B:R.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, R.T. et al., Bisphosphonates target multiple sites in both cis- and trans-prenyltransferases. Proc.Natl.Acad.Sci.Usa (2007)

Release Date

2007-06-12

Peptides

Geranylgeranyl pyrophosphate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Geranylgeranyl pyrophosphate synthetase

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