SMTL ID : 2z7h.1

S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with inhibitor BPH-210

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

homo-dimer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.80, D.84, R.89 Ligands: GG3.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.80, A:D.84, H2O.4, H2O.12

2 x GG3: {1-HYDROXY-3-[METHYL(4-PHENYLBUTYL)AMINO]PROPANE-1,1-DIYL}BIS(PHOSPHONIC ACID)(Non-covalent)

GG3.2: 12 residues within 4Å: Chain A: R.44, H.73, D.80, D.84, R.89, K.174, F.179, Y.210, Q.211, D.214, K.238 Ligands: MG.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:R.44, A:F.179, A:Y.210 Hydrogen bonds: A:R.89, A:R.89, A:Q.211, A:K.238 Water bridges: A:D.84, A:Q.147 Salt bridges: A:D.80 pi-Stacking: A:Y.210 pi-Cation interactions: A:H.73 GG3.3: 13 residues within 4Å: Chain B: H.73, L.77, D.80, D.84, R.89, Q.147, K.174, L.178, F.179, Y.210, Q.211, D.214, K.238 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:L.178, B:Y.210 Hydrogen bonds: B:D.84, B:R.89, B:R.89, B:Q.147, B:K.174, B:K.174, B:Q.211, B:D.214, B:K.238, B:K.238 Salt bridges: B:D.80 pi-Stacking: B:F.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, R. et al., Structures of a potent phenylalkyl bisphosphonate inhibitor bound to farnesyl and geranylgeranyl diphosphate synthases. Proteins (2008)

Release Date

2008-05-06

Peptides

Geranylgeranyl pyrophosphate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Geranylgeranyl pyrophosphate synthetase

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