SMTL ID : 2e9s.1 (2 other biounits)

human neuronal Rab6B in three intermediate forms

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 9 residues within 4Å: Chain A: Q.11, S.12, K.15, Y.31, T.34, A.59, G.60 Ligands: MG.2, GDP.3 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.11, A:S.12, A:K.15, A:Y.31, A:T.34, A:T.34, A:G.60 Water bridges: A:T.16, A:T.34

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.16, T.34 Ligands: NO3.1, GDP.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.16, A:T.34, H2O.1, H2O.1

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 22 residues within 4Å: Chain A: E.10, Q.11, S.12, V.13, G.14, K.15, T.16, S.17, F.27, D.28, N.29, T.30, Y.31, N.115, K.116, D.118, L.119, S.145, A.146, K.147 Ligands: NO3.1, MG.2 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:E.10, A:S.12, A:V.13, A:G.14, A:K.15, A:T.16, A:S.17, A:S.17, A:D.28, A:N.115, A:K.116, A:K.116, A:A.146, A:K.147 Water bridges: A:Q.32, A:T.34, A:T.34, A:T.34, A:K.147 Salt bridges: A:K.15, A:D.118 pi-Stacking: A:F.27, A:F.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vellieux, F.M. et al., 3D structure of human neuronal Rab6B in three intermediate forms. To be Published

Release Date

2008-01-29

Peptides

Ras-related protein Rab-6B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related protein Rab-6B

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