SMTL ID : 2eul.4 (6 other biounits)

Structure of the transcription factor Gfh1.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

25 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: D.63 Ligands: ZN.2 No protein-ligand interaction detected (PLIP) ZN.2: 2 residues within 4Å: Chain A: D.63 Ligands: ZN.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.63, A:D.63, H2O.2 ZN.3: 1 residues within 4Å: Chain A: E.54 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.54, A:E.54, H2O.1 ZN.4: 2 residues within 4Å: Chain B: E.54, R.57 No protein-ligand interaction detected (PLIP) ZN.5: 1 residues within 4Å: Chain B: D.63 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.63, B:D.63 ZN.6: 1 residues within 4Å: Chain C: E.49 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.49, H2O.8, H2O.9 ZN.7: 3 residues within 4Å: Chain C: D.63, E.66 Ligands: ZN.11 No protein-ligand interaction detected (PLIP) ZN.8: 1 residues within 4Å: Chain C: E.109 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.109, C:E.109, H2O.10 ZN.9: 3 residues within 4Å: Chain C: E.20, E.24 Chain D: R.21 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.20, C:E.20, C:E.24, H2O.9 ZN.10: 2 residues within 4Å: Chain C: D.67, R.71 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.67, H2O.8 ZN.11: 3 residues within 4Å: Chain C: R.23, E.66 Ligands: ZN.7 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.66 ZN.12: 2 residues within 4Å: Chain C: D.63, E.66 No protein-ligand interaction detected (PLIP) ZN.13: 2 residues within 4Å: Chain C: H.132, D.136 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.136, H2O.11 ZN.14: 2 residues within 4Å: Chain A: D.114 Chain C: P.143 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.114 ZN.15: 2 residues within 4Å: Chain C: D.45 Chain D: D.45 3 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: D:D.45, C:D.45, H2O.9 ZN.16: 1 residues within 4Å: Chain D: E.49 3 PLIP interactions: 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.49, D:E.49, H2O.15 ZN.17: 4 residues within 4Å: Chain D: R.23, I.62, E.66 Ligands: ZN.24 3 PLIP interactions: 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.66, D:E.66, H2O.12 ZN.18: 3 residues within 4Å: Chain D: L.85, V.105, E.109 No protein-ligand interaction detected (PLIP) ZN.19: 3 residues within 4Å: Chain C: R.21 Chain D: E.20, E.24 3 PLIP interactions: 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.20, D:E.24, H2O.11 ZN.20: 4 residues within 4Å: Chain D: M.1, D.67 Ligands: ZN.22, ZN.23 No protein-ligand interaction detected (PLIP) ZN.21: 3 residues within 4Å: Chain B: D.114, K.118 Chain D: P.143 No protein-ligand interaction detected (PLIP) ZN.22: 2 residues within 4Å: Chain D: D.63 Ligands: ZN.20 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.63 ZN.23: 3 residues within 4Å: Chain D: D.67, R.71 Ligands: ZN.20 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.67, D:D.67 ZN.24: 3 residues within 4Å: Chain D: D.63, E.66 Ligands: ZN.17 No protein-ligand interaction detected (PLIP) ZN.25: 1 residues within 4Å: Chain D: H.132 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:H.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Symersky, J. et al., Regulation through the RNA Polymerase Secondary Channel: STRUCTURAL AND FUNCTIONAL VARIABILITY OF THE COILED-COIL TRANSCRIPTION FACTORS. J.Biol.Chem. (2006)

Release Date

2005-11-15

Peptides

anti-cleavage anti-GreA transcription factor Gfh1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
A

D
C

anti-cleavage anti-GreA transcription factor Gfh1

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