SMTL ID : 2eul.5 (6 other biounits)

Structure of the transcription factor Gfh1.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

25 x ZN: ZINC ION(Non-covalent)

ZN.1: 1 residues within 4Å: Chain A: E.49 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.49, H2O.1, H2O.1 ZN.2: 3 residues within 4Å: Chain A: D.63, E.66 Ligands: ZN.6 No protein-ligand interaction detected (PLIP) ZN.3: 2 residues within 4Å: Chain A: E.109 Chain D: E.24 4 PLIP interactions: 1 interactions with chain D, 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: D:E.24, A:E.109, A:E.109, H2O.2 ZN.4: 2 residues within 4Å: Chain A: E.20, E.24 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.20, A:E.20, A:E.24, H2O.1 ZN.5: 2 residues within 4Å: Chain A: D.67, R.71 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.67, H2O.1 ZN.6: 3 residues within 4Å: Chain A: R.23, E.66 Ligands: ZN.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.66 ZN.7: 2 residues within 4Å: Chain A: D.63, E.66 No protein-ligand interaction detected (PLIP) ZN.8: 2 residues within 4Å: Chain A: H.132, D.136 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.136, H2O.3 ZN.9: 2 residues within 4Å: Chain A: P.143 Chain C: D.114 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.114 ZN.10: 1 residues within 4Å: Chain B: D.45 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.45 ZN.11: 1 residues within 4Å: Chain B: E.49 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.49, B:E.49, H2O.7 ZN.12: 4 residues within 4Å: Chain B: R.23, I.62, E.66 Ligands: ZN.19 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.66, B:E.66, H2O.4 ZN.13: 5 residues within 4Å: Chain B: L.85, V.105, E.109 Chain C: E.24, Q.27 No protein-ligand interaction detected (PLIP) ZN.14: 2 residues within 4Å: Chain B: E.20, E.24 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.20, B:E.24 ZN.15: 4 residues within 4Å: Chain B: M.1, D.67 Ligands: ZN.17, ZN.18 No protein-ligand interaction detected (PLIP) ZN.16: 3 residues within 4Å: Chain B: P.143 Chain D: D.114, K.118 No protein-ligand interaction detected (PLIP) ZN.17: 2 residues within 4Å: Chain B: D.63 Ligands: ZN.15 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.63 ZN.18: 3 residues within 4Å: Chain B: D.67, R.71 Ligands: ZN.15 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.67, B:D.67 ZN.19: 3 residues within 4Å: Chain B: D.63, E.66 Ligands: ZN.12 No protein-ligand interaction detected (PLIP) ZN.20: 1 residues within 4Å: Chain B: H.132 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.132 ZN.21: 2 residues within 4Å: Chain C: D.63 Ligands: ZN.22 No protein-ligand interaction detected (PLIP) ZN.22: 2 residues within 4Å: Chain C: D.63 Ligands: ZN.21 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.63, C:D.63, H2O.9 ZN.23: 1 residues within 4Å: Chain C: E.54 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.54, C:E.54, H2O.8 ZN.24: 2 residues within 4Å: Chain D: E.54, R.57 No protein-ligand interaction detected (PLIP) ZN.25: 1 residues within 4Å: Chain D: D.63 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.63, D:D.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Symersky, J. et al., Regulation through the RNA Polymerase Secondary Channel: STRUCTURAL AND FUNCTIONAL VARIABILITY OF THE COILED-COIL TRANSCRIPTION FACTORS. J.Biol.Chem. (2006)

Release Date

2005-11-15

Peptides

anti-cleavage anti-GreA transcription factor Gfh1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

D
D

anti-cleavage anti-GreA transcription factor Gfh1

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