SMTL ID : 2ex9.1

Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with penicillin-V

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x 35P: (2R,4S)-5,5-DIMETHYL-2-{(1R)-2-OXO-1-[(PHENOXYACETYL)AMINO]ETHYL}-1,3-THIAZOLIDINE-4-CARBOXYLIC ACID(Covalent)

35P.1: 12 residues within 4Å: Chain A: A.42, S.43, K.46, F.141, K.286, S.287, N.289, L.340, G.400, S.401, L.402, Q.403 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.43, A:S.287, A:S.287, A:N.289, A:S.401, A:S.401 Water bridges: A:T.399, A:S.401

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: L.373, G.393, K.394, S.396, F.411, I.412, T.413, R.419 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.393, A:I.412, A:T.413, A:R.419

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kishida, H. et al., Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics. Biochemistry (2006)

Release Date

2006-06-13

Peptides

Penicillin-binding protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Penicillin-binding protein 4

Related Entries With Identical Sequence