SMTL ID : 2exb.1

Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with FLOMOX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x FXM: 2,2-DIMETHYLPROPANOYLOXYMETHYL (2R)-5-(AMINOCARBONYLOXYMETHYL)-2-[(1R)-1-[[(Z)-2-(2-AZANYL-1,3-THIAZOL-4-YL)PENT-2-ENOYL]AMINO]-2-OXIDANYLIDENE-ETHYL]-3,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLATE(Covalent)

FXM.1: 15 residues within 4Å: Chain A: A.42, S.43, F.141, K.286, S.287, N.289, G.339, L.340, R.342, S.379, T.399, G.400, S.401, L.402, R.440 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.340, A:L.402, A:L.402 Hydrogen bonds: A:S.43, A:S.287, A:T.399, A:S.401 Water bridges: A:K.398, A:K.398

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: L.373, K.394, S.396, F.411, I.412, T.413, R.419 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.396, A:I.412, A:T.413, A:R.419

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kishida, H. et al., Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics. Biochemistry (2006)

Release Date

2006-06-13

Peptides

Penicillin-binding protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Penicillin-binding protein 4

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