SMTL ID : 2f3t.1

Crystal Structure Of E.coli Guanylate Kinase In Complex With Ganciclovir monophosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.16 Å

Oligo State

homo-hexamer

Ligands

4 x LGP: N9-1-HYDROXY-PROP-2-OXYMETHYL-GUANINE-3'-MONOPHOSPHATE(Non-covalent)

LGP.1: 8 residues within 4Å: Chain A: S.38, R.42, R.45, Y.54, E.73, A.75, Y.82, T.84 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.38, A:T.84 Salt bridges: A:R.42, A:R.45, A:E.73, A:D.104 LGP.2: 11 residues within 4Å: Chain B: S.38, R.42, R.45, Y.54, E.73, H.74, A.75, V.77, Y.82, G.83, T.84 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.38, B:Y.82 Salt bridges: B:R.42, B:R.45, B:E.73 pi-Stacking: B:Y.82 LGP.3: 8 residues within 4Å: Chain E: S.38, R.42, R.45, Y.54, E.73, Y.82, T.84, D.104 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:S.38, E:Y.54, E:Y.82 Salt bridges: E:R.42, E:R.45, E:E.73, E:D.104 LGP.4: 6 residues within 4Å: Chain F: S.38, R.45, Y.54, E.73, A.75, Y.82 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:S.38, F:R.42, F:Y.54 Water bridges: F:R.45, F:R.45 Salt bridges: F:R.45, F:E.73, F:D.104 pi-Stacking: F:Y.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hible, G. et al., Crystal structures of GMP kinase in complex with ganciclovir monophosphate and Ap5G. Biochimie (2006)

Release Date

2006-05-30

Peptides

Guanylate kinase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Guanylate kinase

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