SMTL ID : 2f9u.1

HCV NS3 protease domain with NS4a peptide and a ketoamide inhibitor with a P2 norborane

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-2-2-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.107, T.108, C.109, C.155 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.107, A:C.109, A:C.155, H2O.1 ZN.3: 4 residues within 4Å: Chain C: C.107, T.108, C.109, C.155 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:C.107, C:C.109, C:C.155, H2O.3

1 x 5NH: 1,1-DIMETHYLETHYL [1-CYCLOHEXYL-2-[3-[[[1-[2-[[2-[[2-(DIMETHYLAMINO)-2-OXO-1-PHENYLETHYL]AMINO]-2-OXOETHYL]AMINO]-1,2-DIOXOETHYL]PENTYL]AMINO]CARBONYL]-2-AZABICYCLO[2.2.1]HEPTAN-2-YL]-2-OXOETHYL]CARBAMATE(Covalent)

5NH.2: 18 residues within 4Å: Chain A: T.50, Q.51, T.52, V.65, H.67, I.142, L.145, K.146, G.147, S.148, S.149, F.164, R.165, A.166, A.167, V.168, C.169, D.178 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:T.52, A:I.142, A:L.145, A:K.146, A:F.164, A:A.166, A:A.167, A:V.168 Hydrogen bonds: A:Q.51, A:T.52, A:T.52, A:H.67, A:G.147, A:S.149, A:S.149, A:R.165, A:A.167, A:A.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Venkatraman, S. et al., Novel Inhibitors of Hepatitis C NS3-NS4A Serine Protease Derived from 2-Aza-bicyclo[2.2.1]heptane-3-carboxylic acid. Bioorg.Med.Chem.Lett. (2006)

Release Date

2006-06-06

Peptides

NS3 protease/helicase': AC
polyprotein: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

NS3 protease/helicase'

polyprotein

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