SMTL ID : 3kee.1 (1 other biounit)

HCV NS3/NS4A complexed with Non-covalent macrocyclic compound TMC435

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 30B: (2R,3aR,10Z,11aS,12aR,14aR)-N-(cyclopropylsulfonyl)-2-({7-methoxy-8-methyl-2-[4-(1-methylethyl)-1,3-thiazol-2-yl]quinolin-4-yl}oxy)-5-methyl-4,14-dioxo-2,3,3a,4,5,6,7,8,9,11a,12,13,14,14a-tetradecahydrocyclopenta[c]cyclopropa[g][1,6]diazacyclotetradecine-12a(1H)-carboxamide(Non-covalent)

30B.1: 22 residues within 4Å: Chain A: Q.42, S.43, F.44, Y.57, H.58, G.59, V.79, D.80, Q.81, D.82, V.133, L.136, K.137, G.138, S.139, S.140, F.155, R.156, A.157, A.158, C.160, D.169 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Q.42, A:F.44, A:H.58, A:V.133, A:K.137, A:F.155, A:R.156, A:A.157, A:A.158 Hydrogen bonds: A:H.58, A:K.137, A:G.138, A:S.139, A:S.140, A:S.140, A:R.156, A:A.158 30B.3: 19 residues within 4Å: Chain C: Q.42, S.43, F.44, Y.57, H.58, G.59, D.80, D.82, V.133, L.136, K.137, G.138, S.139, S.140, F.155, R.156, A.157, A.158, D.169 20 PLIP interactions: 20 interactions with chain C Hydrophobic interactions: C:Q.42, C:F.44, C:Y.57, C:H.58, C:D.82, C:V.133, C:L.136, C:K.137, C:F.155, C:F.155, C:R.156, C:A.157, C:A.158 Hydrogen bonds: C:H.58, C:G.138, C:S.139, C:S.140, C:S.140, C:R.156, C:A.158

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.98, T.99, C.100, C.146 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.98, A:C.100, A:C.146, H2O.1 ZN.4: 3 residues within 4Å: Chain C: C.98, C.100, C.146 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:C.98, C:C.100, C:C.146, H2O.1

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 2 residues within 4Å: Chain A: R.110, H.111 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cummings, M.D. et al., Induced-Fit Binding of the Macrocyclic Noncovalent Inhibitor TMC435 to its HCV NS3/NS4A Protease Target. Angew.Chem.Int.Ed.Engl. (2010)

Release Date

2010-03-09

Peptides

Genome polyprotein: AC
19-mer peptide from Genome polyprotein: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
E

D
G

Genome polyprotein

19-mer peptide from Genome polyprotein

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