SMTL ID : 2ffv.3 (2 other biounits)

Human ppGalNAcT-2 complexed with manganese and UDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-tetramer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.154, H.156, H.289 Ligands: UDP.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.154, A:H.156, A:H.289 MN.3: 4 residues within 4Å: Chain B: D.154, H.156, H.289 Ligands: UDP.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.154, B:H.156, B:H.289 MN.5: 4 residues within 4Å: Chain C: D.154, H.156, H.289 Ligands: UDP.6 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.154, C:H.156, C:H.289 MN.7: 4 residues within 4Å: Chain D: D.154, H.156, H.289 Ligands: UDP.8 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.154, D:H.156, D:H.289

4 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.2: 15 residues within 4Å: Chain A: T.73, F.74, H.75, D.106, R.131, G.133, L.134, S.137, D.154, H.156, V.260, H.289, R.292, H.295 Ligands: MN.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:T.73 Hydrogen bonds: A:D.106, A:D.106, A:R.131, A:S.137 Salt bridges: A:H.156, A:H.156, A:H.289, A:R.292, A:H.295 UDP.4: 15 residues within 4Å: Chain B: T.73, F.74, H.75, D.106, R.131, G.133, L.134, S.137, D.154, H.156, V.260, H.289, R.292, H.295 Ligands: MN.3 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:T.73, B:L.134 Hydrogen bonds: B:D.106, B:R.131, B:S.137 Salt bridges: B:H.156, B:H.156, B:H.289, B:R.292, B:H.295 UDP.6: 15 residues within 4Å: Chain C: T.73, F.74, H.75, D.106, R.131, G.133, L.134, S.137, D.154, H.156, V.260, H.289, R.292, H.295 Ligands: MN.5 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:T.73 Hydrogen bonds: C:D.106, C:R.131, C:S.137 Salt bridges: C:H.156, C:H.156, C:H.289, C:R.292, C:H.295 UDP.8: 15 residues within 4Å: Chain D: T.73, F.74, H.75, D.106, R.131, G.133, L.134, S.137, D.154, H.156, V.260, H.289, R.292, H.295 Ligands: MN.7 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:T.73, D:L.134 Hydrogen bonds: D:D.106, D:D.106, D:R.131, D:S.137 Salt bridges: D:H.156, D:H.156, D:H.289, D:R.292, D:H.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fritz, T.A. et al., Dynamic Association between the Catalytic and Lectin Domains of Human UDP-GalNAc:Polypeptide {alpha}-N-Acetylgalactosaminyltransferase-2. J.Biol.Chem. (2006)

Release Date

2006-01-31

Peptides

Polypeptide N-acetylgalactosaminyltransferase 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Polypeptide N-acetylgalactosaminyltransferase 2

Related Entries With Identical Sequence