SMTL ID : 2fhk.1

Crystal structure of formylmethanofuran: tetrahydromethanopterin formyltransferase in complex with its coenzymes

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

18 x K: POTASSIUM ION(Non-covalent)

K.1: 5 residues within 4Å: Chain A: D.57, I.190, K.191, V.193, A.196 Ligand excluded by PLIP K.2: 5 residues within 4Å: Chain A: T.41, G.44, A.54, P.199 Chain B: E.39 Ligand excluded by PLIP K.3: 5 residues within 4Å: Chain A: V.97, M.98, A.100, A.103, F.152 Ligand excluded by PLIP K.4: 4 residues within 4Å: Chain A: E.113, T.161, T.162, L.251 Ligand excluded by PLIP K.6: 5 residues within 4Å: Chain B: D.57, I.190, K.191, V.193, A.196 Ligand excluded by PLIP K.7: 5 residues within 4Å: Chain A: E.39 Chain B: T.41, G.44, A.54, P.199 Ligand excluded by PLIP K.8: 5 residues within 4Å: Chain B: V.97, M.98, A.100, A.103, F.152 Ligand excluded by PLIP K.9: 4 residues within 4Å: Chain B: E.113, T.161, T.162, L.251 Ligand excluded by PLIP K.10: 2 residues within 4Å: Chain B: H.293, F.296 Ligand excluded by PLIP K.12: 5 residues within 4Å: Chain C: T.41, G.44, A.54, P.199 Chain D: E.39 Ligand excluded by PLIP K.13: 5 residues within 4Å: Chain C: D.57, I.190, K.191, V.193, A.196 Ligand excluded by PLIP K.14: 5 residues within 4Å: Chain C: V.97, M.98, A.100, A.103, F.152 Ligand excluded by PLIP K.15: 4 residues within 4Å: Chain C: E.113, T.161, T.162, L.251 Ligand excluded by PLIP K.17: 5 residues within 4Å: Chain D: D.57, I.190, K.191, V.193, A.196 Ligand excluded by PLIP K.18: 5 residues within 4Å: Chain C: E.39 Chain D: T.41, G.44, A.54, P.199 Ligand excluded by PLIP K.19: 5 residues within 4Å: Chain D: V.97, M.98, A.100, A.103, F.152 Ligand excluded by PLIP K.20: 4 residues within 4Å: Chain D: E.113, T.161, T.162, L.251 Ligand excluded by PLIP K.21: 6 residues within 4Å: Chain D: A.21, R.22, D.107, M.109, F.158, G.159 Ligand excluded by PLIP

3 x MFN: N-[4,5,7-TRICARBOXYHEPTANOYL]-L-GAMMA-GLUTAMYL-N-{2-[4-({5-[(FORMYLAMINO)METHYL]-3-FURYL}METHOXY)PHENYL]ETHYL}-D-GLUTAMINE(Non-covalent)

MFN.5: 17 residues within 4Å: Chain A: G.94, Q.95, M.98, K.123, F.126, F.127 Chain B: S.46, I.48, M.49, F.200, V.205, S.207, A.208, S.209, F.218, L.219, A.221 15 PLIP interactions: 6 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:K.123, A:F.127, B:I.48, B:F.218, B:F.218, B:F.218, B:L.219 Hydrogen bonds: A:Q.95, A:K.123, B:S.209 Water bridges: A:K.123, B:S.46, B:S.209, B:E.245 Salt bridges: A:K.123 MFN.11: 17 residues within 4Å: Chain A: S.46, I.48, M.49, F.200, V.205, S.207, S.209, F.218, L.219, A.221 Chain B: G.94, Q.95, M.98, T.99, K.123, F.126, F.127 9 PLIP interactions: 5 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:T.99, B:K.123, B:F.127, A:F.218, A:L.219 Hydrogen bonds: B:Q.95 Salt bridges: B:K.123 Water bridges: A:S.209, A:S.209 MFN.16: 14 residues within 4Å: Chain C: Q.95, M.98, Y.122, K.123, F.127 Chain D: S.46, I.48, M.49, F.200, V.205, S.207, A.208, S.209, E.245 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:K.123, C:F.127, C:F.127 Hydrogen bonds: C:Q.95, C:K.123, D:S.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Acharya, P. et al., The structure of formylmethanofuran: tetrahydromethanopterin formyltransferase in complex with its coenzymes. J.Mol.Biol. (2006)

Release Date

2006-03-07

Peptides

Formylmethanofuran--tetrahydromethanopterin formyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Formylmethanofuran--tetrahydromethanopterin formyltransferase

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