SMTL ID : 2fkw.1

Structure of LH2 from Rps. acidophila crystallized in lipidic mesophases

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-9-9-mer

Ligands

27 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)

BCL.1: 25 residues within 4Å: Chain A: P.17, L.20, T.24, A.27, H.31, I.34, W.40, F.41, Y.44, W.45 Chain B: F.22, A.26, A.29, H.30 Chain Q: I.6, G.15, A.18, L.19, S.22 Ligands: LDA.4, BCL.5, LDA.6, BCL.58, RG1.62, BCL.63 12 PLIP interactions: 2 interactions with chain B, 3 interactions with chain Q, 7 interactions with chain A, Hydrophobic interactions: B:A.29, Q:I.6, Q:A.18, Q:L.19, A:L.20, A:L.20, A:I.34, A:W.40, A:F.41, A:Y.44 Hydrogen bonds: B:H.30 Metal complexes: A:H.31 BCL.2: 20 residues within 4Å: Chain A: M.1, N.2, Q.3, I.6 Chain B: V.15, I.16, T.19, R.20, L.23, A.26, L.27, H.30, W.39 Chain C: L.20 Chain D: G.18, V.21 Ligands: BCL.5, BCL.7, RG1.11, RG1.56 10 PLIP interactions: 1 interactions with chain D, 8 interactions with chain B, 1 interactions with chain A, Hydrophobic interactions: D:V.21, B:V.15, B:I.16, B:T.19, B:R.20, B:A.26, B:L.27, B:W.39, A:Q.3 Hydrogen bonds: B:R.20 BCL.5: 24 residues within 4Å: Chain A: V.23, I.26, A.27, V.30, H.31, I.34, W.40 Chain B: T.19, F.22, L.23, A.26, H.30, A.33, T.37, W.39 Chain C: Y.44, W.45 Chain D: F.22 Ligands: BCL.1, BCL.2, BCL.7, RG1.11, LDA.13, RG1.56 13 PLIP interactions: 9 interactions with chain B, 3 interactions with chain A, 1 interactions with chain D, Hydrophobic interactions: B:T.19, B:F.22, B:L.23, B:A.33, B:T.37, B:W.39, B:W.39, B:W.39, A:V.30, A:W.40, D:F.22 Metal complexes: B:H.30 Hydrogen bonds: A:H.31 BCL.7: 24 residues within 4Å: Chain A: I.6, G.15, S.22 Chain C: P.17, L.20, T.24, A.27, H.31, I.34, W.40, F.41, Y.44, W.45 Chain D: F.22, L.25, A.26, A.29, H.30 Ligands: BCL.2, LDA.3, BCL.5, BCL.12, LDA.13, RG1.56 10 PLIP interactions: 1 interactions with chain A, 8 interactions with chain C, 1 interactions with chain D, Hydrophobic interactions: A:I.6, C:P.17, C:L.20, C:I.34, C:W.40, C:F.41, C:Y.44, C:W.45, D:A.29 Metal complexes: C:H.31 BCL.8: 17 residues within 4Å: Chain C: M.1, N.2, Q.3, I.6 Chain D: V.15, I.16, T.19, R.20, H.30, W.39 Chain E: L.20 Chain F: G.18, V.21 Ligands: RG1.11, BCL.12, BCL.14, RG1.18 7 PLIP interactions: 5 interactions with chain D, 1 interactions with chain F, 1 interactions with chain C, Hydrophobic interactions: D:V.15, D:I.16, D:R.20, D:W.39, F:V.21, C:Q.3 Hydrogen bonds: D:R.20 BCL.12: 27 residues within 4Å: Chain C: V.23, I.26, A.27, V.30, H.31, I.34, W.40 Chain D: T.19, F.22, L.23, A.26, H.30, A.33, T.37, W.39 Chain E: Y.44, W.45 Chain F: G.18, V.21, F.22, L.25 Ligands: BCL.7, BCL.8, RG1.11, BCL.14, RG1.18, LDA.20 14 PLIP interactions: 10 interactions with chain D, 2 interactions with chain C, 2 interactions with chain F, Hydrophobic interactions: D:T.19, D:F.22, D:L.23, D:A.33, D:T.37, D:W.39, D:W.39, D:W.39, D:W.39, C:V.30, C:W.40, F:F.22, F:L.25 Metal complexes: D:H.30 BCL.14: 23 residues within 4Å: Chain C: I.6, G.15, A.18, L.19, S.22 Chain E: L.20, T.24, A.27, H.31, I.34, W.40, F.41, W.45 Chain F: F.22, L.25, A.26, A.29, H.30 Ligands: BCL.8, RG1.11, BCL.12, BCL.19, LDA.20 12 PLIP interactions: 7 interactions with chain E, 3 interactions with chain C, 2 interactions with chain F, Hydrophobic interactions: E:L.20, E:L.20, E:I.34, E:W.40, E:F.41, E:W.45, C:I.6, C:A.18, C:L.19, F:A.29 Metal complexes: E:H.31 Hydrogen bonds: F:H.30 BCL.15: 17 residues within 4Å: Chain E: M.1, N.2, Q.3, I.6 Chain F: V.15, I.16, T.19, R.20, L.27, H.30, W.39 Chain G: L.20 Chain H: G.18 Ligands: RG1.18, BCL.19, BCL.21, RG1.25 6 PLIP interactions: 5 interactions with chain F, 1 interactions with chain E, Hydrophobic interactions: F:V.15, F:I.16, F:L.27, F:W.39, E:Q.3 Hydrogen bonds: F:R.20 BCL.19: 23 residues within 4Å: Chain E: V.23, I.26, A.27, V.30, H.31, I.34, W.40 Chain F: T.19, F.22, L.23, A.26, H.30, A.33, T.37, W.39 Chain G: Y.44, W.45 Chain H: F.22 Ligands: BCL.14, BCL.15, RG1.18, BCL.21, RG1.25 14 PLIP interactions: 11 interactions with chain F, 2 interactions with chain E, 1 interactions with chain H, Hydrophobic interactions: F:T.19, F:F.22, F:L.23, F:A.33, F:T.37, F:W.39, F:W.39, F:W.39, F:W.39, E:V.30, E:W.40, H:F.22 pi-Stacking: F:H.30 Metal complexes: F:H.30 BCL.21: 23 residues within 4Å: Chain E: G.15, A.18, L.19, S.22 Chain G: L.20, V.23, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain H: F.22, L.25, A.26, A.29, H.30 Ligands: BCL.15, RG1.18, BCL.19, BCL.26, LDA.27 13 PLIP interactions: 2 interactions with chain E, 8 interactions with chain G, 2 interactions with chain H, 1 Ligand-Water interactions, Hydrophobic interactions: E:A.18, E:L.19, G:L.20, G:L.20, G:V.23, G:W.40, G:F.41, G:Y.44, G:W.45, H:A.29 Metal complexes: G:H.31, H2O.8 Hydrogen bonds: H:H.30 BCL.22: 16 residues within 4Å: Chain G: M.1, N.2, Q.3 Chain H: I.16, T.19, R.20, L.27, H.30 Chain I: L.20, Y.44 Chain J: G.18, V.21 Ligands: RG1.25, BCL.26, BCL.28, RG1.33 5 PLIP interactions: 4 interactions with chain H, 1 interactions with chain J, Hydrophobic interactions: H:I.16, H:R.20, H:L.27, J:V.21 Hydrogen bonds: H:R.20 BCL.26: 23 residues within 4Å: Chain G: V.23, I.26, A.27, V.30, H.31, I.34 Chain H: T.19, F.22, L.23, A.26, H.30, A.33, W.39 Chain I: Y.44, W.45 Chain J: F.22, L.25 Ligands: BCL.21, BCL.22, RG1.25, BCL.28, RG1.33, LDA.35 9 PLIP interactions: 7 interactions with chain H, 1 interactions with chain J, 1 interactions with chain G, Hydrophobic interactions: H:T.19, H:L.23, H:A.33, H:W.39, H:W.39, H:W.39, J:L.25, G:V.30 Metal complexes: H:H.30 BCL.28: 26 residues within 4Å: Chain G: I.6, G.15, A.18, L.19, S.22 Chain I: P.17, L.20, G.21, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain J: F.22, L.25, A.26, A.29, H.30 Ligands: BCL.22, RG1.25, BCL.26, LDA.31, BCL.34, LDA.35 12 PLIP interactions: 7 interactions with chain I, 2 interactions with chain J, 3 interactions with chain G, Hydrophobic interactions: I:L.20, I:W.40, I:F.41, I:F.41, I:Y.44, I:W.45, J:A.29, G:I.6, G:A.18, G:L.19 Metal complexes: I:H.31 Hydrogen bonds: J:H.30 BCL.29: 15 residues within 4Å: Chain I: M.1, N.2, Q.3, I.6 Chain J: V.15, T.19, R.20, L.27, H.30 Chain K: L.20 Chain L: G.18 Ligands: RG1.33, BCL.34, BCL.36, RG1.40 4 PLIP interactions: 4 interactions with chain J, Hydrophobic interactions: J:V.15, J:R.20, J:L.27 Hydrogen bonds: J:R.20 BCL.34: 23 residues within 4Å: Chain I: V.23, A.27, V.30, H.31, I.34, W.40 Chain J: T.19, F.22, L.23, A.26, H.30, T.37, W.39 Chain K: Y.44, W.45 Chain L: F.22, L.25 Ligands: BCL.28, BCL.29, RG1.33, BCL.36, RG1.40, LDA.42 8 PLIP interactions: 5 interactions with chain J, 3 interactions with chain I, Hydrophobic interactions: J:T.19, J:L.23, J:T.37, J:W.39, I:V.30, I:W.40 Metal complexes: J:H.30 Hydrogen bonds: I:H.31 BCL.36: 25 residues within 4Å: Chain I: I.6, G.15, L.19, S.22 Chain K: P.17, L.20, V.23, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain L: F.22, L.25, A.26, A.29, H.30 Ligands: BCL.29, LDA.30, RG1.33, BCL.34, BCL.41, LDA.42 12 PLIP interactions: 9 interactions with chain K, 1 interactions with chain L, 2 interactions with chain I, Hydrophobic interactions: K:P.17, K:L.20, K:V.23, K:W.40, K:W.40, K:F.41, K:F.41, K:Y.44, L:A.29, I:I.6, I:L.19 Metal complexes: K:H.31 BCL.37: 16 residues within 4Å: Chain K: M.1, N.2, Q.3, I.6 Chain L: V.15, I.16, T.19, R.20, H.30 Chain M: L.20 Chain N: G.18, V.21 Ligands: RG1.40, BCL.41, BCL.43, RG1.47 5 PLIP interactions: 4 interactions with chain L, 1 interactions with chain N, Hydrophobic interactions: L:V.15, L:T.19, L:R.20, N:V.21 Hydrogen bonds: L:R.20 BCL.41: 24 residues within 4Å: Chain K: V.23, I.26, A.27, V.30, H.31, I.34, W.40 Chain L: T.19, F.22, L.23, A.26, H.30, T.37, W.39 Chain M: Y.44 Chain N: V.21, F.22, L.25 Ligands: BCL.36, BCL.37, RG1.40, BCL.43, RG1.47, LDA.49 14 PLIP interactions: 10 interactions with chain L, 2 interactions with chain K, 2 interactions with chain N, Hydrophobic interactions: L:T.19, L:F.22, L:L.23, L:L.23, L:T.37, L:W.39, L:W.39, L:W.39, L:W.39, K:V.30, K:W.40, N:V.21, N:L.25 Metal complexes: L:H.30 BCL.43: 25 residues within 4Å: Chain K: I.6, W.7, G.15, S.22 Chain M: P.17, L.20, T.24, A.27, H.31, I.34, W.40, F.41, Y.44, W.45 Chain N: F.22, L.25, A.26, A.29, H.30 Ligands: BCL.37, LDA.38, RG1.40, BCL.41, BCL.48, LDA.49 12 PLIP interactions: 8 interactions with chain M, 2 interactions with chain K, 2 interactions with chain N, Hydrophobic interactions: M:P.17, M:L.20, M:I.34, M:W.40, M:F.41, M:Y.44, M:W.45, K:I.6, K:W.7, N:A.29 Metal complexes: M:H.31 Hydrogen bonds: N:H.30 BCL.44: 19 residues within 4Å: Chain M: M.1, N.2, Q.3 Chain N: V.15, I.16, T.19, R.20, A.26, L.27, H.30, W.39 Chain O: L.20, Y.44 Chain P: G.18, V.21 Ligands: RG1.47, BCL.48, BCL.50, RG1.53 10 PLIP interactions: 7 interactions with chain N, 2 interactions with chain P, 1 interactions with chain M, Hydrophobic interactions: N:V.15, N:I.16, N:R.20, N:L.27, N:W.39, N:W.39, P:V.21, P:V.21, M:Q.3 Hydrogen bonds: N:R.20 BCL.48: 22 residues within 4Å: Chain M: V.23, I.26, A.27, V.30, H.31, I.34 Chain N: T.19, F.22, L.23, A.26, H.30, A.33, W.39 Chain O: Y.44 Chain P: F.22, L.25 Ligands: BCL.43, BCL.44, RG1.47, BCL.50, RG1.53, LDA.55 11 PLIP interactions: 1 interactions with chain M, 8 interactions with chain N, 2 interactions with chain P, Hydrophobic interactions: M:V.30, N:T.19, N:L.23, N:A.33, N:W.39, N:W.39, N:W.39, P:F.22, P:L.25 pi-Cation interactions: N:H.30 Metal complexes: N:H.30 BCL.50: 24 residues within 4Å: Chain M: I.6, W.7, G.15, A.18, L.19, S.22 Chain O: L.20, V.23, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain P: F.22, A.26, A.29, H.30 Ligands: BCL.44, RG1.47, BCL.48, BCL.54, LDA.55 13 PLIP interactions: 1 interactions with chain P, 8 interactions with chain O, 4 interactions with chain M, Hydrophobic interactions: P:A.29, O:L.20, O:L.20, O:V.23, O:W.40, O:F.41, O:Y.44, O:W.45, M:I.6, M:W.7, M:A.18, M:L.19 Metal complexes: O:H.31 BCL.51: 18 residues within 4Å: Chain O: M.1, N.2, Q.3 Chain P: V.15, I.16, T.19, R.20, L.23, A.26, L.27, H.30, W.39 Chain Q: L.20 Chain R: G.18 Ligands: RG1.53, BCL.54, BCL.57, RG1.62 9 PLIP interactions: 8 interactions with chain P, 1 interactions with chain O, Hydrophobic interactions: P:V.15, P:I.16, P:I.16, P:R.20, P:A.26, P:L.27, P:W.39, O:Q.3 Hydrogen bonds: P:R.20 BCL.54: 23 residues within 4Å: Chain O: V.23, I.26, A.27, V.30, H.31, I.34, W.40 Chain P: T.19, F.22, L.23, A.26, H.30, W.39 Chain Q: Y.44, W.45 Chain R: V.21, L.25 Ligands: BCL.50, BCL.51, RG1.53, BCL.57, LDA.59, RG1.62 11 PLIP interactions: 8 interactions with chain P, 1 interactions with chain R, 2 interactions with chain O, Hydrophobic interactions: P:T.19, P:L.23, P:L.23, P:W.39, P:W.39, P:W.39, P:W.39, R:V.21, O:V.30, O:W.40 Metal complexes: P:H.30 BCL.57: 26 residues within 4Å: Chain O: I.6, W.7, G.15, L.19, S.22 Chain Q: P.17, L.20, G.21, V.23, T.24, A.27, H.31, W.40, F.41, Y.44, W.45 Chain R: F.22, L.25, A.26, A.29, H.30 Ligands: BCL.51, RG1.53, BCL.54, LDA.59, BCL.63 11 PLIP interactions: 3 interactions with chain O, 2 interactions with chain R, 6 interactions with chain Q, Hydrophobic interactions: O:I.6, O:W.7, O:L.19, R:A.29, Q:L.20, Q:V.23, Q:W.40, Q:Y.44, Q:W.45 Hydrogen bonds: R:H.30 Metal complexes: Q:H.31 BCL.58: 17 residues within 4Å: Chain A: L.20 Chain B: G.18 Chain Q: M.1, N.2, Q.3 Chain R: V.15, I.16, T.19, R.20, A.26, L.27, H.30, W.39 Ligands: BCL.1, RG1.56, RG1.62, BCL.63 7 PLIP interactions: 7 interactions with chain R, Hydrophobic interactions: R:V.15, R:I.16, R:R.20, R:A.26, R:L.27, R:W.39 Hydrogen bonds: R:R.20 BCL.63: 23 residues within 4Å: Chain A: Y.44, W.45 Chain B: F.22, L.25 Chain Q: V.23, I.26, A.27, V.30, H.31, I.34, W.40 Chain R: T.19, F.22, L.23, A.26, H.30, A.33, W.39 Ligands: BCL.1, RG1.56, BCL.57, BCL.58, RG1.62 12 PLIP interactions: 8 interactions with chain R, 2 interactions with chain Q, 2 interactions with chain B, Hydrophobic interactions: R:T.19, R:L.23, R:A.26, R:A.33, R:W.39, R:W.39, R:W.39, Q:V.30, Q:W.40, B:F.22, B:L.25 Metal complexes: R:H.30

27 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)

LDA.3: 6 residues within 4Å: Chain A: N.11, I.14 Chain C: A.13, I.14, P.17 Ligands: BCL.7 Ligand excluded by PLIP LDA.4: 10 residues within 4Å: Chain A: A.13, I.14, P.17, A.18, G.21, S.22, V.25 Chain Q: N.11, I.14 Ligands: BCL.1 Ligand excluded by PLIP LDA.6: 8 residues within 4Å: Chain A: W.40, Y.44 Chain B: A.29, L.32, A.36, T.37, P.38 Ligands: BCL.1 Ligand excluded by PLIP LDA.9: 4 residues within 4Å: Chain C: I.14 Chain E: A.13, I.14, S.22 Ligand excluded by PLIP LDA.10: 4 residues within 4Å: Chain A: V.25, L.29 Chain C: L.32 Ligands: LDA.61 Ligand excluded by PLIP LDA.13: 8 residues within 4Å: Chain C: Y.44 Chain D: A.29, L.32, A.33, A.36, T.37 Ligands: BCL.5, BCL.7 Ligand excluded by PLIP LDA.16: 6 residues within 4Å: Chain C: L.29, L.32, S.36, H.37 Chain E: L.29, L.32 Ligand excluded by PLIP LDA.17: 6 residues within 4Å: Chain E: V.25, L.29 Chain G: V.25, I.28, L.32 Ligands: LDA.24 Ligand excluded by PLIP LDA.20: 8 residues within 4Å: Chain E: W.40, Y.44 Chain F: A.29, A.36, T.37, P.38 Ligands: BCL.12, BCL.14 Ligand excluded by PLIP LDA.23: 6 residues within 4Å: Chain E: N.11, I.14 Chain G: A.13, I.14, G.21, S.22 Ligand excluded by PLIP LDA.24: 6 residues within 4Å: Chain G: L.29, S.36, H.37 Chain I: L.32 Ligands: LDA.17, LDA.32 Ligand excluded by PLIP LDA.27: 8 residues within 4Å: Chain G: W.40, Y.44 Chain H: A.29, L.32, A.36, T.37, P.38 Ligands: BCL.21 Ligand excluded by PLIP LDA.30: 5 residues within 4Å: Chain I: I.14 Chain K: A.13, I.14, G.21 Ligands: BCL.36 Ligand excluded by PLIP LDA.31: 7 residues within 4Å: Chain G: N.11, I.14 Chain I: A.13, I.14, P.17, A.18 Ligands: BCL.28 Ligand excluded by PLIP LDA.32: 6 residues within 4Å: Chain I: L.29, L.32, A.33, S.36 Chain K: L.32 Ligands: LDA.24 Ligand excluded by PLIP LDA.35: 10 residues within 4Å: Chain I: W.40, Y.44 Chain J: A.29, L.32, A.33, A.36, T.37, P.38 Ligands: BCL.26, BCL.28 Ligand excluded by PLIP LDA.38: 4 residues within 4Å: Chain K: I.14 Chain M: A.13, I.14 Ligands: BCL.43 Ligand excluded by PLIP LDA.39: 7 residues within 4Å: Chain K: L.29, L.32, A.33, S.36 Chain M: V.25, I.28, L.32 Ligand excluded by PLIP LDA.42: 10 residues within 4Å: Chain K: W.40, Y.44 Chain L: A.29, L.32, A.33, A.36, T.37, P.38 Ligands: BCL.34, BCL.36 Ligand excluded by PLIP LDA.45: 6 residues within 4Å: Chain M: N.11, I.14 Chain O: A.13, I.14, P.17, G.21 Ligand excluded by PLIP LDA.46: 7 residues within 4Å: Chain M: L.29, L.32, A.33, S.36, H.37 Chain O: L.32, L.35 Ligand excluded by PLIP LDA.49: 9 residues within 4Å: Chain M: W.40, Y.44 Chain N: A.29, A.33, A.36, T.37, P.38 Ligands: BCL.41, BCL.43 Ligand excluded by PLIP LDA.52: 8 residues within 4Å: Chain O: V.25, L.29, L.32, A.33, S.36 Chain Q: V.25, I.28, L.32 Ligand excluded by PLIP LDA.55: 8 residues within 4Å: Chain O: Y.44 Chain P: L.25, A.29, L.32, A.36, T.37 Ligands: BCL.48, BCL.50 Ligand excluded by PLIP LDA.59: 8 residues within 4Å: Chain Q: W.40, Y.44 Chain R: A.29, L.32, A.36, T.37 Ligands: BCL.54, BCL.57 Ligand excluded by PLIP LDA.60: 4 residues within 4Å: Chain O: I.14 Chain Q: A.13, I.14, S.22 Ligand excluded by PLIP LDA.61: 7 residues within 4Å: Chain A: V.25, L.32 Chain Q: L.29, A.33, S.36, H.37 Ligands: LDA.10 Ligand excluded by PLIP

9 x RG1: Rhodopin b-D-glucoside(Non-covalent)

RG1.11: 23 residues within 4Å: Chain A: Q.3, K.5, I.6 Chain B: A.5 Chain C: L.20, V.23, I.26, A.33 Chain D: E.10, L.11, Y.14, G.18, T.19 Chain E: A.27, I.28, H.31, L.32, W.45 Ligands: BCL.2, BCL.5, BCL.8, BCL.12, BCL.14 23 PLIP interactions: 5 interactions with chain C, 5 interactions with chain E, 4 interactions with chain A, 9 interactions with chain D Hydrophobic interactions: C:L.20, C:V.23, C:I.26, C:I.26, C:A.33, E:A.27, E:I.28, E:H.31, E:L.32, E:W.45, A:K.5, A:K.5, A:I.6, A:I.6, D:E.10, D:L.11, D:Y.14, D:Y.14, D:Y.14, D:Y.14, D:T.19 Hydrogen bonds: D:E.10 Water bridges: D:Q.7 RG1.18: 23 residues within 4Å: Chain C: Q.3, K.5, I.6 Chain D: A.5 Chain E: L.20, V.23, I.26, V.30 Chain F: E.10, L.11, Y.14, G.18, T.19, F.22 Chain G: A.27, I.28, H.31, W.45 Ligands: BCL.8, BCL.12, BCL.15, BCL.19, BCL.21 16 PLIP interactions: 8 interactions with chain F, 4 interactions with chain G, 1 interactions with chain C, 3 interactions with chain E Hydrophobic interactions: F:E.10, F:L.11, F:Y.14, F:Y.14, F:T.19, F:F.22, G:A.27, G:I.28, G:H.31, G:W.45, C:I.6, E:L.20, E:V.23, E:I.26 Hydrogen bonds: F:E.10 Water bridges: F:Q.7 RG1.25: 28 residues within 4Å: Chain E: Q.3, K.5, I.6, V.9 Chain F: A.5 Chain G: L.20, V.23, I.26, V.30, A.33 Chain H: Q.7, E.10, L.11, Y.14, V.15, G.18, T.19, F.22 Chain I: A.27, I.28, H.31, L.32, W.45 Ligands: BCL.15, BCL.19, BCL.22, BCL.26, BCL.28 22 PLIP interactions: 6 interactions with chain G, 5 interactions with chain I, 4 interactions with chain E, 7 interactions with chain H Hydrophobic interactions: G:L.20, G:V.23, G:I.26, G:I.26, G:V.30, G:A.33, I:A.27, I:I.28, I:H.31, I:L.32, I:W.45, E:K.5, E:K.5, E:I.6, E:V.9, H:E.10, H:Y.14, H:Y.14, H:F.22 Hydrogen bonds: H:Q.7, H:Q.7, H:E.10 RG1.33: 26 residues within 4Å: Chain G: Q.3, K.5, I.6, T.8 Chain H: A.5 Chain I: L.20, V.23, I.26, A.33 Chain J: Q.7, E.10, L.11, Y.14, V.15, G.18, T.19 Chain K: A.27, I.28, H.31, L.32, W.45 Ligands: BCL.22, BCL.26, BCL.29, BCL.34, BCL.36 19 PLIP interactions: 4 interactions with chain I, 7 interactions with chain J, 5 interactions with chain K, 3 interactions with chain G Hydrophobic interactions: I:L.20, I:V.23, I:I.26, I:A.33, J:L.11, J:Y.14, J:Y.14, J:Y.14, J:T.19, K:A.27, K:I.28, K:H.31, K:L.32, K:W.45, G:K.5, G:I.6 Hydrogen bonds: J:E.10, G:K.5 Water bridges: J:Q.7 RG1.40: 25 residues within 4Å: Chain I: Q.3, K.5, I.6 Chain J: A.5 Chain K: L.20, V.23, I.26, L.29, V.30 Chain L: E.10, L.11, Y.14, V.15, G.18, T.19, F.22 Chain M: A.27, I.28, H.31, L.32 Ligands: BCL.29, BCL.34, BCL.37, BCL.41, BCL.43 20 PLIP interactions: 3 interactions with chain M, 6 interactions with chain K, 7 interactions with chain L, 4 interactions with chain I Hydrophobic interactions: M:A.27, M:H.31, M:L.32, K:L.20, K:V.23, K:I.26, K:I.26, K:L.29, K:V.30, L:Y.14, L:Y.14, L:Y.14, L:T.19, L:F.22, I:K.5, I:K.5, I:I.6 Hydrogen bonds: L:E.10 Water bridges: L:Q.7, I:K.5 RG1.47: 24 residues within 4Å: Chain K: Q.3, K.5, I.6 Chain L: A.5 Chain M: L.20, V.23, I.26, V.30 Chain N: E.10, L.11, Y.14, V.15, G.18, T.19 Chain O: A.27, I.28, H.31, L.32, W.45 Ligands: BCL.37, BCL.41, BCL.44, BCL.48, BCL.50 18 PLIP interactions: 8 interactions with chain N, 5 interactions with chain M, 2 interactions with chain K, 3 interactions with chain O Hydrophobic interactions: N:E.10, N:Y.14, N:Y.14, N:Y.14, N:Y.14, N:T.19, M:L.20, M:V.23, M:I.26, M:I.26, M:V.30, K:K.5, K:I.6, O:A.27, O:L.32, O:W.45 Hydrogen bonds: N:E.10 Water bridges: N:Q.7 RG1.53: 23 residues within 4Å: Chain M: Q.3, K.5, I.6 Chain N: A.5 Chain O: L.20, V.23, I.26, V.30 Chain P: E.10, L.11, Y.14, V.15, G.18, T.19 Chain Q: A.27, H.31, L.32, W.45 Ligands: BCL.44, BCL.48, BCL.51, BCL.54, BCL.57 17 PLIP interactions: 4 interactions with chain Q, 4 interactions with chain O, 3 interactions with chain M, 6 interactions with chain P Hydrophobic interactions: Q:A.27, Q:H.31, Q:L.32, Q:W.45, O:V.23, O:I.26, O:I.26, O:V.30, M:I.6, M:I.6, P:E.10, P:Y.14, P:Y.14, P:Y.14, P:T.19 Hydrogen bonds: M:K.5, P:E.10 RG1.56: 25 residues within 4Å: Chain A: L.20, V.23, I.26, V.30, A.33 Chain B: E.10, L.11, Y.14, V.15, G.18, T.19 Chain C: A.27, I.28, H.31, L.32, W.45 Chain Q: Q.3, K.5, I.6 Chain R: A.5 Ligands: BCL.2, BCL.5, BCL.7, BCL.58, BCL.63 21 PLIP interactions: 9 interactions with chain B, 5 interactions with chain A, 2 interactions with chain Q, 5 interactions with chain C Hydrophobic interactions: B:E.10, B:L.11, B:Y.14, B:Y.14, B:Y.14, B:Y.14, B:T.19, A:L.20, A:V.23, A:I.26, A:V.30, A:A.33, Q:I.6, C:A.27, C:I.28, C:H.31, C:L.32, C:W.45 Water bridges: B:L.11, B:L.11, Q:K.5 RG1.62: 25 residues within 4Å: Chain A: A.27, I.28, H.31, L.32, W.45 Chain O: Q.3, K.5, I.6 Chain P: A.5 Chain Q: L.20, V.23, I.26, A.33 Chain R: E.10, L.11, Y.14, V.15, G.18, T.19, F.22 Ligands: BCL.1, BCL.51, BCL.54, BCL.58, BCL.63 18 PLIP interactions: 1 interactions with chain O, 7 interactions with chain R, 5 interactions with chain A, 4 interactions with chain Q, 1 interactions with chain P Hydrophobic interactions: O:I.6, R:L.11, R:Y.14, R:Y.14, R:Y.14, R:T.19, R:F.22, A:A.27, A:I.28, A:H.31, A:L.32, A:W.45, Q:L.20, Q:V.23, Q:I.26, Q:A.33 Hydrogen bonds: R:E.10 Water bridges: P:A.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cherezov, V. et al., Room to Move: Crystallizing Membrane Proteins in Swollen Lipidic Mesophases. J.Mol.Biol. (2006)

Release Date

2006-03-28

Peptides

Light-harvesting protein B-800/850, alpha chain: ACEGIKMOQ
Light-harvesting protein B-800/850, beta chain: BDFHJLNPR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

I
I

K
K

M
M

O
O

Q
R

B
B

D
D

F
F

H
H

J
J

L
L

N
N

P
P

R
S

Membrane

We predict this structure to be a membrane protein.
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Light-harvesting protein B-800/850, alpha chain

Light-harvesting protein B-800/850, beta chain

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