SMTL ID : 2fpl.1

RadA recombinase in complex with AMP-PNP and low concentration of K+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: T.112 Ligands: ANP.6 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.112, H2O.1, H2O.1, H2O.1 MG.2: 2 residues within 4Å: Chain A: Q.98, D.246 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:Q.98, A:D.246, H2O.1, H2O.1, H2O.1, H2O.1

3 x K: POTASSIUM ION(Non-covalent)

K.3: 3 residues within 4Å: Chain A: A.282, T.283, D.302 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:A.282, A:D.302, H2O.1 K.4: 2 residues within 4Å: Chain A: R.296 Ligands: ANP.6 No protein-ligand interaction detected (PLIP) K.5: 3 residues within 4Å: Chain A: T.6, L.8, V.11 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.6, A:L.8, A:V.11, H2O.5

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.6: 16 residues within 4Å: Chain A: V.106, F.107, G.108, S.109, G.110, K.111, T.112, Q.113, R.158, Q.161, Q.257, R.296, T.316, E.317 Ligands: MG.1, K.4 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.108, A:S.109, A:G.110, A:K.111, A:K.111, A:K.111, A:T.112, A:Q.113, A:Q.113, A:Q.161, A:Q.161, A:Q.257, A:R.296 Water bridges: A:T.112, A:T.153 pi-Cation interactions: A:R.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qian, X. et al., Crystal Structure of Methanococcus Voltae Rada in Complex with Adp: hydrolysis-induced conformational change. Biochemistry (2005)

Release Date

2006-01-31

Peptides

DNA repair and recombination protein radA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA repair and recombination protein radA

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