SMTL ID : 2fww.1

human beta-tryptase II complexed with 4-piperidinebutyrate to make acylenzyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-tetramer

Ligands

4 x C1R: 4-PIPERIDINEBUTYRATE(Covalent)

C1R.1: 13 residues within 4Å: Chain A: H.44, D.188, S.189, C.190, Q.191, G.192, D.193, S.194, V.212, W.214, G.217, C.218, G.225 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.212 Hydrogen bonds: A:D.188, A:G.192, A:D.193, A:S.194 C1R.2: 15 residues within 4Å: Chain B: H.44, D.188, S.189, C.190, Q.191, G.192, D.193, S.194, V.212, W.214, G.215, G.217, C.218, G.225, I.226 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.188, B:G.192, B:D.193, B:S.194 C1R.3: 13 residues within 4Å: Chain C: H.44, D.188, S.189, C.190, Q.191, G.192, D.193, S.194, V.212, W.214, G.217, C.218, G.225 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.188, C:G.192, C:D.193, C:S.194 C1R.4: 14 residues within 4Å: Chain D: H.44, D.188, S.189, C.190, Q.191, G.192, D.193, S.194, V.212, W.214, G.217, C.218, G.225, I.226 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:V.212 Hydrogen bonds: D:D.188, D:G.192, D:D.193, D:S.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McGrath, M.E. et al., Structure-guided design of Peptide-based tryptase inhibitors. Biochemistry (2006)

Release Date

2006-02-14

Peptides

Tryptase beta-2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Tryptase beta-2

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