SMTL ID : 2fyk.1

Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 in complex with ADP and Biotin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 12 residues within 4Å: Chain A: R.48, R.51, K.52, W.53, E.54, N.103, D.104, K.111, N.131, P.137, A.140 Ligands: BTN.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:R.48, A:E.54, A:N.103, A:D.104, A:K.111, A:N.131, A:N.131 Water bridges: A:R.51, A:R.51, A:K.52, A:E.54, A:L.232 Salt bridges: A:R.51, A:K.100, A:K.111, A:K.111 pi-Stacking: A:W.53, A:W.53 ADP.3: 12 residues within 4Å: Chain B: R.48, R.51, K.52, W.53, E.54, N.103, D.104, K.111, N.131, P.137, A.140 Ligands: BTN.4 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:R.48, B:E.54, B:N.103, B:K.111, B:N.131, B:N.131 Water bridges: B:R.233, B:R.233 Salt bridges: B:R.48, B:R.48, B:R.51, B:R.51, B:K.111, B:K.111 pi-Stacking: B:W.53, B:W.53

2 x BTN: BIOTIN(Non-covalent)

BTN.2: 21 residues within 4Å: Chain A: S.21, T.22, N.23, Q.42, G.45, H.46, G.47, R.48, W.53, W.61, L.62, S.63, N.103, D.104, K.111, G.114, V.115, L.116, I.128, G.129 Ligands: ADP.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.53, A:W.53 Hydrogen bonds: A:T.22, A:T.22, A:N.23, A:Q.42, A:H.46, A:H.46, A:R.48, A:N.103 Salt bridges: A:K.111 BTN.4: 21 residues within 4Å: Chain B: S.21, T.22, N.23, Q.42, G.45, H.46, G.47, R.48, W.53, W.61, L.62, S.63, N.103, D.104, K.111, G.114, V.115, L.116, I.128, G.129 Ligands: ADP.3 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:W.53, B:W.53 Hydrogen bonds: B:T.22, B:N.23, B:Q.42, B:Q.42, B:H.46, B:H.46, B:R.48, B:N.103 Salt bridges: B:R.48, B:K.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bagautdinov, B. et al., Ligand Structures Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3. To be Published

Release Date

2006-08-08

Peptides

biotin--protein ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

biotin--protein ligase

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