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SMTL ID : 2g0t.2
(1 other biounit)
Crystal structure of a putative nucleotide binding protein (tm0796) from Thermotoga maritima at 2.67 A resolution
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.67 Å
Oligo State
homo-tetramer
Ligands
4 x
PO4
:
PHOSPHATE ION
(Non-functional Binders)
PO4.1:
6 residues within 4Å:
Chain A:
C.179
,
V.180
,
V.181
,
G.182
,
K.183
,
R.184
13
PLIP interactions
:
13 interactions with chain A
Hydrogen bonds:
A:V.180
,
A:V.181
,
A:G.182
,
A:K.183
,
A:R.184
Water bridges:
A:G.182
,
A:K.183
,
A:R.184
,
A:R.184
,
A:T.185
,
A:Q.253
Salt bridges:
A:K.183
,
A:R.184
PO4.4:
5 residues within 4Å:
Chain B:
V.180
,
V.181
,
G.182
,
K.183
,
R.184
9
PLIP interactions
:
9 interactions with chain B
Hydrogen bonds:
B:V.180
,
B:V.181
,
B:G.182
,
B:K.183
,
B:R.184
Water bridges:
B:K.183
,
B:T.185
Salt bridges:
B:K.183
,
B:R.184
PO4.7:
6 residues within 4Å:
Chain C:
C.179
,
V.180
,
V.181
,
G.182
,
K.183
,
R.184
13
PLIP interactions
:
13 interactions with chain C
Hydrogen bonds:
C:V.180
,
C:V.181
,
C:G.182
,
C:K.183
,
C:R.184
Water bridges:
C:G.182
,
C:K.183
,
C:R.184
,
C:R.184
,
C:T.185
,
C:Q.253
Salt bridges:
C:K.183
,
C:R.184
PO4.10:
5 residues within 4Å:
Chain D:
V.180
,
V.181
,
G.182
,
K.183
,
R.184
9
PLIP interactions
:
9 interactions with chain D
Hydrogen bonds:
D:V.180
,
D:V.181
,
D:G.182
,
D:K.183
,
D:R.184
Water bridges:
D:K.183
,
D:T.185
Salt bridges:
D:K.183
,
D:R.184
6 x
EDO
:
1,2-ETHANEDIOL
(Non-functional Binders)
EDO.2:
4 residues within 4Å:
Chain A:
W.16
,
K.17
,
L.18
,
Q.20
2
PLIP interactions
:
2 interactions with chain A
Hydrogen bonds:
A:Q.20
Water bridges:
A:W.16
EDO.3:
6 residues within 4Å:
Chain A:
R.184
,
G.207
,
Q.208
,
T.209
,
E.251
,
Q.253
6
PLIP interactions
:
6 interactions with chain A
Hydrogen bonds:
A:T.40
,
A:R.184
,
A:T.209
,
A:T.209
,
A:E.251
,
A:Q.253
EDO.5:
5 residues within 4Å:
Chain B:
W.16
,
K.17
,
L.18
,
Y.19
,
Q.20
1
PLIP interactions
:
1 interactions with chain B
Hydrogen bonds:
B:W.16
EDO.8:
4 residues within 4Å:
Chain C:
W.16
,
K.17
,
L.18
,
Q.20
2
PLIP interactions
:
2 interactions with chain C
Hydrogen bonds:
C:Q.20
Water bridges:
C:W.16
EDO.9:
6 residues within 4Å:
Chain C:
R.184
,
G.207
,
Q.208
,
T.209
,
E.251
,
Q.253
5
PLIP interactions
:
5 interactions with chain C
Hydrogen bonds:
C:T.40
,
C:R.184
,
C:T.209
,
C:E.251
,
C:Q.253
EDO.11:
5 residues within 4Å:
Chain D:
W.16
,
K.17
,
L.18
,
Y.19
,
Q.20
1
PLIP interactions
:
1 interactions with chain D
Hydrogen bonds:
D:W.16
2 x
FMT
:
FORMIC ACID
(Non-functional Binders)
FMT.6:
7 residues within 4Å:
Chain B:
Q.189
,
E.192
,
R.193
,
E.196
,
L.340
Chain D:
R.193
,
T.337
4
PLIP interactions
:
2 interactions with chain D
,
2 interactions with chain B
Hydrogen bonds:
D:R.193
,
D:R.193
,
B:Q.189
,
B:Q.189
FMT.12:
7 residues within 4Å:
Chain B:
R.193
,
T.337
Chain D:
Q.189
,
E.192
,
R.193
,
E.196
,
L.340
5
PLIP interactions
:
3 interactions with chain D
,
2 interactions with chain B
Hydrogen bonds:
D:Q.189
,
D:Q.189
,
D:E.192
,
B:R.193
,
B:R.193
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Joint Center for Structural Genomics (JCSG), Crystal structure of hypothetical protein (tm0796) from Thermotoga maritima at 2.67 A resolution. To be published
Release Date
2006-02-28
Peptides
conserved hypothetical protein:
A
B
C
D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
A
D
B
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conserved hypothetical protein
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2g0t.1
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