SMTL ID : 2g1o.3 (4 other biounits)

Ketopiperazine-Based Renin Inhibitors: Optimization of the "C" Ring

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-hexamer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: H.67, N.68, T.70 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.70, A:T.70 NAG.3: 6 residues within 4Å: Chain B: H.67, N.68, G.69, T.70, M.100, R.132 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:N.68 Hydrogen bonds: B:T.70, B:R.132 NAG.5: 3 residues within 4Å: Chain C: H.67, N.68, T.70 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.70 NAG.7: 6 residues within 4Å: Chain D: H.67, N.68, G.69, T.70, M.100, R.132 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:N.68 Hydrogen bonds: D:T.70, D:R.132 NAG.9: 3 residues within 4Å: Chain E: H.67, N.68, T.70 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:T.70, E:T.70 NAG.11: 6 residues within 4Å: Chain F: H.67, N.68, G.69, T.70, M.100, R.132 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:N.68 Hydrogen bonds: F:T.70, F:R.132

6 x 2IG: 6-ETHYL-5-[9-(3-METHOXYPROPYL)-9H-CARBAZOL-2-YL]PYRIMIDINE-2,4-DIAMINE(Non-covalent)

2IG.2: 19 residues within 4Å: Chain A: T.11, Q.12, Y.13, V.29, D.31, G.33, Y.76, S.77, T.78, P.111, F.112, L.114, A.115, F.117, V.120, D.219, T.220, G.221, S.223 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:V.29, A:D.31, A:Y.76, A:Y.76, A:Y.76, A:P.111, A:F.112, A:L.114, A:A.115, A:F.117, A:V.120 Hydrogen bonds: A:Y.13, A:G.33, A:S.77, A:T.78 Water bridges: A:S.77 Salt bridges: A:D.31, A:D.219 pi-Stacking: A:F.117, A:F.117 2IG.4: 19 residues within 4Å: Chain B: T.11, Q.12, Y.13, V.29, D.31, G.33, Y.76, S.77, T.78, P.111, F.112, L.114, A.115, F.117, V.120, D.219, T.220, G.221, S.223 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:Q.12, B:V.29, B:D.31, B:Y.76, B:P.111, B:F.112, B:L.114, B:A.115, B:F.117, B:V.120 Hydrogen bonds: B:Y.13, B:G.33, B:S.77, B:T.78, B:T.78 Salt bridges: B:D.31, B:D.219 pi-Stacking: B:F.117, B:F.117 2IG.6: 19 residues within 4Å: Chain C: T.11, Q.12, Y.13, V.29, D.31, G.33, Y.76, S.77, T.78, P.111, F.112, L.114, A.115, F.117, V.120, D.219, T.220, G.221, S.223 20 PLIP interactions: 20 interactions with chain C Hydrophobic interactions: C:V.29, C:D.31, C:Y.76, C:Y.76, C:Y.76, C:P.111, C:F.112, C:L.114, C:A.115, C:F.117, C:V.120 Hydrogen bonds: C:Y.13, C:G.33, C:S.77, C:T.78 Water bridges: C:S.77 Salt bridges: C:D.31, C:D.219 pi-Stacking: C:F.117, C:F.117 2IG.8: 19 residues within 4Å: Chain D: T.11, Q.12, Y.13, V.29, D.31, G.33, Y.76, S.77, T.78, P.111, F.112, L.114, A.115, F.117, V.120, D.219, T.220, G.221, S.223 19 PLIP interactions: 19 interactions with chain D Hydrophobic interactions: D:Q.12, D:V.29, D:D.31, D:Y.76, D:P.111, D:F.112, D:L.114, D:A.115, D:F.117, D:V.120 Hydrogen bonds: D:Y.13, D:G.33, D:S.77, D:T.78, D:T.78 Salt bridges: D:D.31, D:D.219 pi-Stacking: D:F.117, D:F.117 2IG.10: 19 residues within 4Å: Chain E: T.11, Q.12, Y.13, V.29, D.31, G.33, Y.76, S.77, T.78, P.111, F.112, L.114, A.115, F.117, V.120, D.219, T.220, G.221, S.223 20 PLIP interactions: 20 interactions with chain E Hydrophobic interactions: E:V.29, E:D.31, E:Y.76, E:Y.76, E:Y.76, E:P.111, E:F.112, E:L.114, E:A.115, E:F.117, E:V.120 Hydrogen bonds: E:Y.13, E:G.33, E:S.77, E:T.78 Water bridges: E:S.77 Salt bridges: E:D.31, E:D.219 pi-Stacking: E:F.117, E:F.117 2IG.12: 19 residues within 4Å: Chain F: T.11, Q.12, Y.13, V.29, D.31, G.33, Y.76, S.77, T.78, P.111, F.112, L.114, A.115, F.117, V.120, D.219, T.220, G.221, S.223 19 PLIP interactions: 19 interactions with chain F Hydrophobic interactions: F:Q.12, F:V.29, F:D.31, F:Y.76, F:P.111, F:F.112, F:L.114, F:A.115, F:F.117, F:V.120 Hydrogen bonds: F:Y.13, F:G.33, F:S.77, F:T.78, F:T.78 Salt bridges: F:D.31, F:D.219 pi-Stacking: F:F.117, F:F.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Holsworth, D.D. et al., Ketopiperazine-Based Renin Inhibitors: Optimization of the "C" Ring. BIOORG.MED.CHEM.LETT. (2006)

Release Date

2006-06-13

Peptides

Renin: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Renin

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