SMTL ID : 2g45.3 (2 other biounits)

Co-crystal structure of znf ubp domain from the deubiquitinating enzyme isopeptidase T (isot) in complex with ubiquitin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.37, C.40, C.57, N.68, H.70 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.37, A:C.40, A:C.57, A:H.70 ZN.3: 4 residues within 4Å: Chain B: C.37, C.40, C.57, H.70 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.37, B:C.40, B:C.57, B:H.70

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: W.35, R.43 Chain B: R.43 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reyes-Turcu, F.E. et al., The Ubiquitin Binding Domain ZnF UBP Recognizes the C-Terminal Diglycine Motif of Unanchored Ubiquitin. Cell(Cambridge,Mass.) (2006)

Release Date

2006-04-04

Peptides

Ubiquitin carboxyl-terminal hydrolase 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Ubiquitin carboxyl-terminal hydrolase 5

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