SMTL ID : 2g4j.1

Anomalous substructure of Glucose isomerase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.216, H.219, N.246, D.254, D.256 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.216, A:H.219, A:D.254, A:D.256, H2O.9 CA.4: 5 residues within 4Å: Chain B: E.216, H.219, N.246, D.254, D.256 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.216, B:H.219, B:D.254, B:D.256, H2O.18 CA.7: 5 residues within 4Å: Chain C: E.216, H.219, N.246, D.254, D.256 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.216, C:H.219, C:D.254, C:D.256, H2O.28 CA.10: 5 residues within 4Å: Chain D: E.216, H.219, N.246, D.254, D.256 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.216, D:H.219, D:D.254, D:D.256, H2O.37

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: E.180, E.216, D.244, D.286 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.180, A:E.216, A:D.244, H2O.8, H2O.9 MG.5: 4 residues within 4Å: Chain B: E.180, E.216, D.244, D.286 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.180, B:E.216, B:D.244, H2O.17, H2O.19 MG.8: 4 residues within 4Å: Chain C: E.180, E.216, D.244, D.286 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.180, C:E.216, C:D.244, H2O.26, H2O.28 MG.11: 4 residues within 4Å: Chain D: E.180, E.216, D.244, D.286 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.180, D:E.216, D:D.244, H2O.35, H2O.37

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain A: A.200, F.201, R.204 Chain D: Q.233, W.236, A.237 Ligand excluded by PLIP CL.6: 6 residues within 4Å: Chain B: A.200, F.201, R.204 Chain C: Q.233, W.236, A.237 Ligand excluded by PLIP CL.9: 6 residues within 4Å: Chain B: Q.233, W.236, A.237 Chain C: A.200, F.201, R.204 Ligand excluded by PLIP CL.12: 6 residues within 4Å: Chain A: Q.233, W.236, A.237 Chain D: A.200, F.201, R.204 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mueller-Dieckmann, C. et al., On the routine use of soft X-rays in macromolecular crystallography. Part IV. Efficient determination of anomalous substructures in biomacromolecules using longer X-ray wavelengths. Acta Crystallogr.,Sect.D (2007)

Release Date

2007-02-20

Peptides

Xylose isomerase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Xylose isomerase

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