SMTL ID : 2g4l.1

Anomalous substructure of hydroxynitrile lyase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-dimer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.23, E.27 Chain B: F.150, K.170 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Water bridges: A:K.23, A:V.33, B:K.170 Salt bridges: A:K.23, B:K.170 SO4.2: 4 residues within 4Å: Chain A: T.137, K.138, D.139, G.140 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.139, A:G.140 Salt bridges: A:K.138 SO4.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.4: 3 residues within 4Å: Chain A: K.141, N.181, K.185 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.181 Water bridges: A:N.181 Salt bridges: A:K.141, A:K.185 SO4.5: 4 residues within 4Å: Chain A: T.110, K.191, G.195, Y.222 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.110, A:T.110, A:G.195 Water bridges: A:K.199 Salt bridges: A:K.199 SO4.7: 4 residues within 4Å: Chain A: F.150, K.170 Chain B: K.23, E.27 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Water bridges: B:K.23, B:V.33, A:K.170 Salt bridges: B:K.23, A:K.170 SO4.8: 4 residues within 4Å: Chain B: T.137, K.138, D.139, G.140 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.139, B:D.139, B:G.140 Salt bridges: B:K.138 SO4.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.10: 3 residues within 4Å: Chain B: K.141, N.181, K.185 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.181 Water bridges: B:N.181 Salt bridges: B:K.141, B:K.185 SO4.11: 4 residues within 4Å: Chain B: T.110, K.191, G.195, Y.222 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.110, B:G.195, B:Y.222 Water bridges: B:K.199 Salt bridges: B:K.199

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain A: T.190, K.191 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain B: T.190, K.191 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mueller-Dieckmann, C. et al., On the routine use of soft X-rays in macromolecular crystallography. Part IV. Efficient determination of anomalous substructures in biomacromolecules using longer X-ray wavelengths. Acta Crystallogr.,Sect.D (2007)

Release Date

2007-02-20

Peptides

(S)-acetone-cyanohydrin lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

(S)-acetone-cyanohydrin lyase

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