SMTL ID : 7yas.3 (2 other biounits)

HYDROXYNITRILE LYASE, LOW TEMPERATURE NATIVE STRUCTURE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.137, K.138, D.139, G.140 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.139, A:G.140 SO4.2: 2 residues within 4Å: Chain A: F.150, K.170 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.170, A:K.170 Salt bridges: A:K.170 SO4.3: 4 residues within 4Å: Chain A: Y.116, W.217 Chain B: K.229, E.231 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Y.116, A:Y.116, B:E.231 Water bridges: B:K.229 Salt bridges: B:K.229 SO4.6: 4 residues within 4Å: Chain B: T.137, K.138, D.139, G.140 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.139, B:D.139, B:G.140 SO4.7: 2 residues within 4Å: Chain B: F.150, K.170 3 PLIP interactions: 3 interactions with chain B Water bridges: B:K.170, B:K.170 Salt bridges: B:K.170 SO4.8: 4 residues within 4Å: Chain A: K.229, E.231 Chain B: Y.116, W.217 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:E.231, B:Y.116, B:Y.116 Water bridges: A:K.229 Salt bridges: A:K.229

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.4: 7 residues within 4Å: Chain A: F.3, A.4, H.5, G.30, H.31, K.32, E.72 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.72 EPE.9: 7 residues within 4Å: Chain B: F.3, A.4, H.5, G.30, H.31, K.32, E.72 2 PLIP interactions: 2 interactions with chain B Water bridges: B:E.72, B:E.72

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain A: T.11, I.12, S.80, C.81, W.128, L.178 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.80, A:S.80 GOL.10: 6 residues within 4Å: Chain B: T.11, I.12, S.80, C.81, W.128, L.178 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.11, B:S.80, B:S.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zuegg, J. et al., Three-dimensional structures of enzyme-substrate complexes of the hydroxynitrile lyase from Hevea brasiliensis. Protein Sci. (1999)

Release Date

1999-10-13

Peptides

PROTEIN (HYDROXYNITRILE LYASE): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PROTEIN (HYDROXYNITRILE LYASE)

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