SMTL ID : 2g84.1

Cytidine and deoxycytidylate deaminase zinc-binding region from Nitrosomonas europaea.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.79, E.81, C.114, C.117 Ligands: EDO.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.79, A:C.114, A:C.117, H2O.8 ZN.4: 5 residues within 4Å: Chain B: H.79, E.81, C.114, C.117 Ligands: EDO.7 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.79, B:C.114, B:C.117, H2O.16

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: F.50, H.79, E.81, A.111, E.112, C.114, E.145 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.111 Water bridges: A:H.79, A:C.114, A:C.114 EDO.6: 5 residues within 4Å: Chain B: G.10, P.12, R.69, P.72, G.73 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.69 EDO.7: 8 residues within 4Å: Chain B: F.50, H.79, E.81, A.111, E.112, V.138, E.145 Ligands: ZN.4 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.111 Water bridges: B:H.79, B:C.114, B:C.114

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.3: 3 residues within 4Å: Chain A: D.137, C.173, R.177 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.169 Water bridges: A:D.137, A:D.137, A:R.177 BME.8: 4 residues within 4Å: Chain B: D.137, C.173, L.176, R.177 1 PLIP interactions: 1 interactions with chain B Water bridges: B:D.136

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 2 residues within 4Å: Chain B: E.157, V.163 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.157, B:V.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., X-ray crystal structure of Cytidine and deoxycytidylate deaminase zinc-binding region from Nitrosomonas europaea. To be Published

Release Date

2006-04-04

Peptides

Cytidine and deoxycytidylate deaminase zinc-binding region: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cytidine and deoxycytidylate deaminase zinc-binding region

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