SMTL ID : 4lcp.1

Crytsal structure of NE0047 in complex with 2,6-diaminopurine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.79, E.81, C.114, M.116, C.117 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.79, A:C.114, A:C.117, H2O.1 ZN.3: 5 residues within 4Å: Chain B: H.79, E.81, C.114, M.116, C.117 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.79, B:C.114, B:C.117, H2O.4

1 x 6AP: 9H-PURINE-2,6-DIAMINE(Non-covalent)

6AP.2: 10 residues within 4Å: Chain A: F.50, N.68, H.79, E.81, A.111, E.112, V.138, F.143, D.144, E.145 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.68, A:E.112, A:D.144 Water bridges: A:C.114, A:C.114 Salt bridges: A:E.81, A:E.145 pi-Stacking: A:F.50, A:H.79 pi-Cation interactions: A:F.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bitra, A. et al., Structural basis of the substrate specificity of cytidine deaminase superfamily Guanine deaminase. Biochemistry (2013)

Release Date

2014-01-22

Peptides

Cytidine and deoxycytidylate deaminase zinc-binding region: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cytidine and deoxycytidylate deaminase zinc-binding region

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