SMTL ID : 2gd1.1

COENZYME-INDUCED CONFORMATIONAL CHANGES IN GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM BACILLUS STEAROTHERMOPHILLUS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.181, D.183, R.196, R.232 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.181, A:D.183, A:D.183 Salt bridges: A:R.196, A:R.232 SO4.2: 5 residues within 4Å: Chain A: S.150, T.152, T.209, G.210, A.211 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.150, A:T.152, A:T.209, A:G.210, A:A.211 Water bridges: A:T.153, A:G.210 SO4.3: 4 residues within 4Å: Chain B: T.181, D.183, R.196, R.232 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.181, B:D.183 Salt bridges: B:R.196, B:R.232 SO4.4: 4 residues within 4Å: Chain B: S.150, T.209, G.210, A.211 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.150, B:S.150, B:T.152, B:G.210, B:A.211 Water bridges: B:T.208 SO4.5: 4 residues within 4Å: Chain C: T.181, D.183, R.196, R.232 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:D.183 Water bridges: C:R.196, C:R.232 Salt bridges: C:R.196, C:R.232 SO4.6: 4 residues within 4Å: Chain C: S.150, T.209, G.210, A.211 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:S.150, C:S.150, C:G.210 Water bridges: C:R.232, C:R.232, C:R.232, C:R.232 SO4.7: 5 residues within 4Å: Chain D: T.181, N.182, D.183, R.196, R.232 2 PLIP interactions: 2 interactions with chain D Salt bridges: D:R.196, D:R.232 SO4.8: 5 residues within 4Å: Chain D: S.150, T.152, T.209, G.210, A.211 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:S.150, D:S.150, D:T.209, D:G.210, D:A.211 Water bridges: D:T.152, D:T.153, D:T.153, D:T.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skarzynski, T. et al., Coenzyme-induced conformational changes in glyceraldehyde-3-phosphate dehydrogenase from Bacillus stearothermophilus. J.Mol.Biol. (1988)

Release Date

1989-10-15

Peptides

APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
O

B
P

C
Q

D
R

APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE

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