SMTL ID : 2gdd.1

Human beta II tryptase with inhibitor CRA-27592

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-tetramer

Ligands

4 x 5AM: BENZYL {(1S)-5-AMINO-1-[(S)-HYDROXY(5-{[4-(4-PHENYLBUTANOYL)PIPERAZIN-1-YL]METHYL}-1,2,4-OXADIAZOL-3-YL)METHYL]PENTYL}CARBAMATE(Covalent)

5AM.1: 20 residues within 4Å: Chain A: V.20, F.28, H.44, C.45, K.51, D.52, L.56, D.188, S.189, C.190, Q.191, G.192, D.193, S.194, V.212, S.213, W.214, G.215, G.217, G.225 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.28, A:K.51, A:L.56, A:L.56 Hydrogen bonds: A:S.189, A:Q.191, A:G.192, A:D.193, A:S.194, A:S.213 Water bridges: A:I.226 5AM.2: 19 residues within 4Å: Chain B: V.20, F.28, H.44, C.45, V.46, K.51, D.52, L.56, D.188, S.189, C.190, Q.191, G.192, D.193, S.194, V.212, S.213, W.214, G.225 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:F.28, B:F.28, B:V.46, B:K.51, B:K.51, B:L.56, B:L.56 Hydrogen bonds: B:S.189, B:S.189, B:C.190, B:Q.191, B:G.192, B:D.193, B:S.194, B:S.213 Water bridges: B:S.189 5AM.3: 22 residues within 4Å: Chain C: V.20, F.28, H.44, C.45, V.46, K.51, D.52, L.56, I.77, D.188, S.189, C.190, Q.191, G.192, D.193, S.194, V.212, S.213, W.214, G.215, G.217, G.225 16 PLIP interactions: 16 interactions with chain C Hydrophobic interactions: C:F.28, C:V.46, C:K.51, C:K.51, C:L.56, C:L.56, C:I.77, C:V.212 Hydrogen bonds: C:S.189, C:C.190, C:Q.191, C:G.192, C:D.193, C:S.194, C:S.213 Water bridges: C:S.189 5AM.4: 20 residues within 4Å: Chain D: V.20, F.28, H.44, C.45, K.51, D.52, A.55, L.56, D.188, S.189, C.190, Q.191, G.192, D.193, S.194, V.212, S.213, W.214, G.217, G.225 15 PLIP interactions: 15 interactions with chain D Hydrophobic interactions: D:V.20, D:F.28, D:H.44, D:K.51, D:A.55, D:L.56, D:L.56 Hydrogen bonds: D:S.189, D:S.189, D:Q.191, D:G.192, D:D.193, D:S.194, D:S.213 Water bridges: D:K.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Somoza, J.R., Human beta II tryptase with inhibitor CRA-27592. To be Published

Release Date

2006-04-11

Peptides

Tryptase beta-2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Tryptase beta-2

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