SMTL ID : 2gjk.1

Structural and functional insights into the human Upf1 helicase core

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: T.209, D.346, E.347, G.541 Ligands: ANP.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.209

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 20 residues within 4Å: Chain A: P.179, D.180, L.181, N.182, Q.185, P.204, G.205, T.206, G.207, K.208, T.209, V.210, K.243, Q.375, Y.412, R.413, G.541, E.543, R.575 Ligands: MG.1 27 PLIP interactions: 27 interactions with chain A Hydrogen bonds: A:N.182, A:Q.185, A:Q.185, A:G.205, A:T.206, A:G.207, A:K.208, A:K.208, A:T.209, A:T.209, A:V.210, A:Q.375, A:Q.375, A:Q.375, A:R.413, A:R.413, A:E.543, A:R.575, A:R.575 Water bridges: A:G.541, A:G.541, A:E.543, A:R.577, A:R.577 Salt bridges: A:K.243, A:R.413 pi-Stacking: A:Y.412

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, Z. et al., Structural and functional insights into the human Upf1 helicase core. Embo J. (2007)

Release Date

2007-01-09

Peptides

Regulator of nonsense transcripts 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Regulator of nonsense transcripts 1

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