SMTL ID : 2gs7.1

Crystal Structure of the inactive EGFR kinase domain in complex with AMP-PNP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: R.149, N.150, D.163 Ligands: ANP.7 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.163, H2O.2 MG.8: 4 residues within 4Å: Chain B: R.149, N.150, D.163 Ligands: ANP.15 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.163, H2O.4

11 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 3 residues within 4Å: Chain A: P.156, Q.157 Chain B: K.47 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: I.186, K.187 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: L.141, V.142, R.144 Ligand excluded by PLIP IOD.5: 1 residues within 4Å: Chain A: N.79 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: Y.223, D.224 Ligand excluded by PLIP IOD.9: 4 residues within 4Å: Chain A: K.21, K.47 Chain B: P.156, Q.157 Ligand excluded by PLIP IOD.10: 3 residues within 4Å: Chain B: K.183, I.186, K.187 Ligand excluded by PLIP IOD.11: 3 residues within 4Å: Chain A: P.102 Chain B: K.36, P.102 Ligand excluded by PLIP IOD.12: 2 residues within 4Å: Chain B: V.142, R.144 Ligand excluded by PLIP IOD.13: 1 residues within 4Å: Chain B: N.79 Ligand excluded by PLIP IOD.14: 2 residues within 4Å: Chain B: Y.223, P.242 Ligand excluded by PLIP

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.7: 13 residues within 4Å: Chain A: L.26, G.27, G.29, V.34, A.51, K.53, T.98, Q.99, M.101, R.149, L.152, D.163 Ligands: MG.1 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.29, A:T.98, A:Q.99, A:M.101, A:R.149 Water bridges: A:K.53, A:C.105, A:R.149, A:N.150, A:D.163, A:D.163 Salt bridges: A:K.53 ANP.15: 15 residues within 4Å: Chain B: L.26, G.27, G.29, A.30, V.34, A.51, K.53, T.98, Q.99, M.101, R.149, N.150, L.152, D.163 Ligands: MG.8 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:A.30, B:T.98, B:Q.99, B:M.101, B:C.105, B:R.149 Water bridges: B:K.53, B:R.149, B:N.150, B:N.150 Salt bridges: B:K.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., An allosteric mechanism for activation of the kinase domain of epidermal growth factor receptor. Cell(Cambridge,Mass.) (2006)

Release Date

2006-06-20

Peptides

Epidermal growth factor receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Epidermal growth factor receptor

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