SMTL ID : 2gvz.1

Crystal Structure of Complex of Gs- with The Catalytic Domains of Mammalian Adenylyl Cyclase: Complex with MANT-ATP and Mn

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.27 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: D.85 Ligands: FKP.3, ONA.4 No protein-ligand interaction detected (PLIP) MN.2: 5 residues within 4Å: Chain A: D.41, I.42, E.43, D.85 Ligands: ONA.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.41, A:I.42, A:D.85 MN.5: 4 residues within 4Å: Chain C: S.54, T.204, D.223 Ligands: GSP.7 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:S.54, C:T.204

1 x FKP: METHYLPIPERAZINOFORSKOLIN(Non-covalent)

FKP.3: 21 residues within 4Å: Chain A: F.39, L.83, C.86, Y.88, D.150, V.151, W.152, S.153, V.156, T.157, N.160, E.163 Chain B: F.26, K.27, Y.30, L.46, I.71, G.72, S.73, T.74 Ligands: MN.1 13 PLIP interactions: 6 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:F.39, A:L.83, A:V.156, B:F.26, B:F.26, B:Y.30, B:L.46, B:I.71 Hydrogen bonds: A:V.151, A:S.153, B:S.73, B:T.74 Salt bridges: A:E.163

1 x ONA: 3'-O-[2-(METHYLAMINO)BENZOYL]ADENOSINE 5'-(TETRAHYDROGEN TRIPHOSPHATE)(Non-covalent)

ONA.4: 19 residues within 4Å: Chain A: D.41, I.42, G.44, F.45, T.46, A.49, A.54, L.57, G.84, D.85, R.129 Chain B: I.71, G.152, N.153, V.155, N.156, K.196 Ligands: MN.1, MN.2 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:A.54, A:L.57 Hydrogen bonds: A:G.44, A:T.46, A:T.46, A:D.85, A:R.129, B:N.156 Salt bridges: B:K.196

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 5 residues within 4Å: Chain C: A.48, V.248, A.249, R.265, A.269 Ligand excluded by PLIP

1 x GSP: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE(Non-covalent)

GSP.7: 25 residues within 4Å: Chain C: E.50, S.51, G.52, K.53, S.54, T.55, D.173, L.198, R.199, R.201, V.202, L.203, T.204, D.223, V.224, G.226, Q.227, N.292, K.293, D.295, L.296, C.365, A.366, V.367 Ligands: MN.5 20 PLIP interactions: 20 interactions with chain C Hydrogen bonds: C:E.50, C:S.51, C:G.52, C:K.53, C:S.54, C:T.55, C:T.55, C:D.173, C:L.198, C:R.199, C:R.201, C:V.202, C:T.204, C:G.226, C:N.292, C:K.293, C:A.366, C:V.367 Salt bridges: C:K.53, C:D.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mou, T.-C. et al., Broad specificity of Mammalian adenylyl cyclase for interaction with 2',3'-substituted purine- and pyrimidine nucleotide inhibitors. Mol.Pharmacol. (2006)

Release Date

2006-07-04

Peptides

Adenylate cyclase type 5: A
Adenylate cyclase type 2: B
Guanine nucleotide-binding protein G(s), alpha subunit: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Adenylate cyclase type 5

Adenylate cyclase type 2

Guanine nucleotide-binding protein G(s), alpha subunit

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