SMTL ID : 2gws.4 (3 other biounits)

Crystal Structure of human DNA Polymerase lambda with a G/G mismatch in the primer terminus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x DG- DT- DG- DC- DG- DG: 5'-D(*GP*TP*GP*CP*GP*G)-3'(Non-covalent)

DG-DT-DG-DC-DG-DG.1: 23 residues within 4Å: Chain A: A.5, G.6, C.7, G.8, C.9, A.10, C.11 Chain B: I.101, W.102, G.103, A.104, G.105, T.106, K.107, T.108, K.232, L.234, R.248, D.250, Y.265, F.266 Ligands: EDO.3, NA.5 Protein-ligand interaction information (PLIP) not available

1 x DG- DC- DC- DG: 5'-D(P*GP*CP*CP*G)-3'(Non-covalent)

DG-DC-DC-DG.2: 18 residues within 4Å: Chain A: C.1, G.2, G.3, C.4 Chain B: Y.27, W.34, R.35, G.38, Y.39, I.62, P.63, G.64, I.65, G.66, R.68, M.69, K.72 Ligands: NA.4 Protein-ligand interaction information (PLIP) not available

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: A.5 Chain B: Y.265, A.270 Ligands: DG-DT-DG-DC-DG-DG.1 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.265 Water bridges: B:N.273

3 x NA: SODIUM ION(Non-functional Binders)

NA.4: 1 residues within 4Å: Ligands: DG-DC-DC-DG.2 No protein-ligand interaction detected (PLIP) NA.5: 5 residues within 4Å: Chain B: S.99, I.101, G.103, A.104 Ligands: DG-DT-DG-DC-DG-DG.1 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.99, B:G.103, B:A.104 NA.6: 1 residues within 4Å: Chain B: N.100 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Picher, A.J. et al., Promiscuous mismatch extension by human DNA polymerase lambda. Nucleic Acids Res. (2006)

Release Date

2006-09-05

Peptides

DNA polymerase lambda: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
M

DNA polymerase lambda

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