SMTL ID : 5ddy.3 (3 other biounits)

Binary complex of human Polymerase lambda with dCTP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.36 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: G.176, S.177, D.187, D.189 Ligands: DCP.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.187, A:D.189

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: D.187, D.189, D.250 Ligands: DCP.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.187, A:D.189, A:D.250 MN.4: 3 residues within 4Å: Chain A: S.99, I.101, A.104 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.99

1 x DCP: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE(Non-covalent)

DCP.3: 15 residues within 4Å: Chain A: R.146, G.176, S.177, R.180, G.186, D.187, D.189, Y.265, F.266, T.267, G.268, A.270, N.273 Ligands: MG.1, MN.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.177, A:S.177, A:R.180, A:G.186, A:D.187, A:D.187, A:N.273, A:R.277 Salt bridges: A:R.146, A:R.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, M.S. et al., Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda. J.Am.Chem.Soc. (2016)

Release Date

2016-02-24

Peptides

DNA polymerase lambda: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

DNA polymerase lambda

Related Entries With Identical Sequence