SMTL ID : 2gzh.1

Crystal Structure of Rab11 in Complex with Rab11-Family Interacting Protein 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.47 Å

Oligo State

hetero-2-2-mer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: Q.166, T.167, T.170 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.166 PO4.5: 3 residues within 4Å: Chain C: Q.166, T.167, T.170 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.166

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.25, T.43 Ligands: GTP.4 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.25, A:T.43, H2O.5, H2O.5 MG.3: 3 residues within 4Å: Chain A: E.71, R.72, E.108 No protein-ligand interaction detected (PLIP) MG.6: 3 residues within 4Å: Chain C: S.25, T.43 Ligands: GTP.8 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:S.25, C:T.43, H2O.10, H2O.10 MG.7: 3 residues within 4Å: Chain C: E.71, R.72, E.108 No protein-ligand interaction detected (PLIP)

2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.4: 24 residues within 4Å: Chain A: D.19, S.20, G.21, V.22, G.23, K.24, S.25, N.26, F.36, N.37, L.38, S.40, S.42, T.43, A.68, G.69, N.124, K.125, D.127, L.128, S.154, A.155, L.156 Ligands: MG.2 27 PLIP interactions: 27 interactions with chain A Hydrogen bonds: A:G.21, A:V.22, A:G.23, A:K.24, A:S.25, A:N.26, A:N.26, A:N.37, A:S.40, A:K.41, A:T.43, A:G.69, A:N.124, A:K.125, A:K.125, A:A.155, A:L.156 Water bridges: A:S.25, A:S.25, A:S.40, A:T.43, A:T.43 Salt bridges: A:K.24, A:K.24, A:D.127 pi-Stacking: A:F.36, A:F.36 GTP.8: 24 residues within 4Å: Chain C: D.19, S.20, G.21, V.22, G.23, K.24, S.25, N.26, F.36, N.37, L.38, S.40, S.42, T.43, A.68, G.69, N.124, K.125, D.127, L.128, S.154, A.155, L.156 Ligands: MG.6 26 PLIP interactions: 26 interactions with chain C Hydrogen bonds: C:G.21, C:V.22, C:G.23, C:K.24, C:S.25, C:N.26, C:N.26, C:N.37, C:S.40, C:K.41, C:T.43, C:T.43, C:G.69, C:N.124, C:K.125, C:K.125, C:A.155, C:L.156 Water bridges: C:S.25, C:S.25, C:S.40 Salt bridges: C:K.24, C:K.24, C:D.127 pi-Stacking: C:F.36, C:F.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jagoe, W.N. et al., Crystal structure of rab11 in complex with rab11 family interacting protein 2. Structure (2006)

Release Date

2006-08-15

Peptides

Ras-related protein Rab-11A: AC
RAB11-FIP2 long isoform: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Ras-related protein Rab-11A

RAB11-FIP2 long isoform

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