SMTL ID : 2h4j.1

Sir2-deacetylated peptide (from enzymatic turnover in crystal)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.124, C.127, C.148, C.151 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.124, A:C.127, A:C.148, A:C.151

1 x NCA: NICOTINAMIDE(Non-covalent)

NCA.2: 7 residues within 4Å: Chain A: A.22, I.30, P.31, F.33, N.99, I.100, D.101 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.33, A:I.100, A:D.101, A:D.101

1 x OAD: 2'-O-ACETYL ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

OAD.3: 17 residues within 4Å: Chain A: G.21, A.22, G.23, T.26, P.27, P.31, D.32, Q.98, G.188, S.189, S.190, V.192, N.214, L.215, M.230, D.231, V.232 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:T.26 Hydrogen bonds: A:A.22, A:G.23, A:T.26, A:P.31, A:D.32, A:S.189, A:S.190, A:S.190, A:N.214, A:L.215, A:D.231, A:D.231, A:V.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hoff, K.G. et al., Insights into the Sirtuin Mechanism from Ternary Complexes Containing NAD(+) and Acetylated Peptide. Structure (2006)

Release Date

2006-09-05

Peptides

NAD-dependent deacetylase: A
Cellular tumor antigen p53: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

NAD-dependent deacetylase

Cellular tumor antigen p53

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