SMTL ID : 2h6g.1

W102T Protein Farnesyltransferase Mutant Complexed with a Geranylgeranylated DDPTASACVLS Peptide Product at 1.85A Resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 12 residues within 4Å: Chain A: Y.241, G.282, Q.285, D.286 Chain B: A.230, R.231, Q.233, N.234, W.235, G.237, N.269, S.272 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.285, A:D.286, B:A.230, B:N.269, B:N.269, B:S.272, B:Q.233, A:Y.241, A:G.282, A:Q.285 Water bridges: A:D.286, B:W.235, A:D.286

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain B: D.297, C.299, Y.361, H.362 Chain C: C.8 Ligands: GER.3 5 PLIP interactions: 1 interactions with chain C, 4 interactions with chain B Metal complexes: C:C.8, B:D.297, B:D.297, B:C.299, B:H.362

1 x GER: GERAN-8-YL GERAN(Non-covalent)

GER.3: 19 residues within 4Å: Chain B: T.102, W.106, A.151, Y.154, R.202, Y.205, C.206, H.248, G.250, C.254, D.297, C.299, Y.300, W.303, Y.361, Y.365 Chain C: C.8, L.10 Ligands: ZN.2 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:Y.154, B:Y.154, B:R.202, B:Y.205, B:W.303, B:W.303, C:L.10, C:L.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Terry, K.L. et al., Conversion of protein farnesyltransferase to a geranylgeranyltransferase. Biochemistry (2006)

Release Date

2006-08-29

Peptides

Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit: A
Protein farnesyltransferase beta subunit: B
farnesylated peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
P

Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit

Protein farnesyltransferase beta subunit

farnesylated peptide

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