SMTL ID : 2h6i.1

W102T/Y365F Protein Farnesyltransferase Double Mutant Complexed with a Geranylgeranylated DDPTASACVLS Peptide Product at 3.0A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 12 residues within 4Å: Chain A: Y.241, G.282, Q.285, D.286 Chain B: A.230, R.231, Q.233, N.234, W.235, G.237, N.269, S.272 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:A.230, B:N.269, B:N.269, B:S.272, A:Q.285, A:D.286, A:Y.241, A:G.282, A:Q.285, B:Q.233

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain B: D.297, C.299, Y.361, H.362 Chain C: C.8 Ligands: GER.3 5 PLIP interactions: 1 interactions with chain C, 4 interactions with chain B Metal complexes: C:C.8, B:D.297, B:D.297, B:C.299, B:H.362

1 x GER: GERAN-8-YL GERAN(Non-covalent)

GER.3: 19 residues within 4Å: Chain A: Y.166 Chain B: T.102, Y.105, W.106, A.151, Y.154, A.155, R.202, H.248, G.250, C.254, D.297, C.299, Y.300, W.303, Y.361 Chain C: C.8, L.10 Ligands: ZN.2 9 PLIP interactions: 1 interactions with chain C, 8 interactions with chain B Hydrophobic interactions: C:L.10, B:T.102, B:Y.105, B:Y.154, B:A.155, B:R.202, B:R.202, B:W.303, B:W.303

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Terry, K.L. et al., Conversion of protein farnesyltransferase to a geranylgeranyltransferase. Biochemistry (2006)

Release Date

2006-08-29

Peptides

Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit: A
Protein farnesyltransferase beta subunit: B
farnesylated peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
P

Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit

Protein farnesyltransferase beta subunit

farnesylated peptide

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