- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 6 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.3: 10 residues within 4Å:- Chain A: K.252, D.334, A.335, E.336, G.337, R.338, L.363, T.364
- Ligands: ZN.2, GOL.8
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:A.335, A:E.336, A:G.337, A:R.338, A:L.363
BCT.25: 10 residues within 4Å:- Chain B: K.252, D.334, A.335, E.336, G.337, R.338, L.363, T.364
- Ligands: ZN.24, GOL.30
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:A.335, B:E.336, B:G.337, B:R.338, B:L.363
BCT.47: 10 residues within 4Å:- Chain C: K.252, D.334, A.335, E.336, G.337, R.338, L.363, T.364
- Ligands: ZN.46, GOL.52
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:A.335, C:E.336, C:G.337, C:R.338, C:L.363
BCT.69: 10 residues within 4Å:- Chain D: K.252, D.334, A.335, E.336, G.337, R.338, L.363, T.364
- Ligands: ZN.68, GOL.74
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:K.252, D:A.335, D:E.336, D:G.337, D:R.338, D:L.363
BCT.91: 10 residues within 4Å:- Chain E: K.252, D.334, A.335, E.336, G.337, R.338, L.363, T.364
- Ligands: ZN.90, GOL.96
6 PLIP interactions:6 interactions with chain E- Hydrogen bonds: E:K.252, E:A.335, E:E.336, E:G.337, E:R.338, E:L.363
BCT.113: 10 residues within 4Å:- Chain F: K.252, D.334, A.335, E.336, G.337, R.338, L.363, T.364
- Ligands: ZN.112, GOL.118
6 PLIP interactions:6 interactions with chain F- Hydrogen bonds: F:K.252, F:A.335, F:E.336, F:G.337, F:R.338, F:L.363
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 3 residues within 4Å:- Chain A: K.98, R.467
- Chain B: S.417
6 PLIP interactions:1 interactions with chain B, 5 interactions with chain A- Water bridges: B:S.417, A:K.98, A:K.98, A:N.101
- Salt bridges: A:K.98, A:R.467
SO4.5: 4 residues within 4Å:- Chain A: S.139, G.140, R.142
- Ligands: NA.6
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.140
- Water bridges: A:I.141
- Salt bridges: A:R.142
SO4.26: 3 residues within 4Å:- Chain B: K.98, R.467
- Chain C: S.417
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain C- Water bridges: B:K.98, B:K.98, B:N.101, C:S.417
- Salt bridges: B:K.98, B:R.467
SO4.27: 4 residues within 4Å:- Chain B: S.139, G.140, R.142
- Ligands: NA.28
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:G.140
- Water bridges: B:I.141
- Salt bridges: B:R.142
SO4.48: 3 residues within 4Å:- Chain A: S.417
- Chain C: K.98, R.467
6 PLIP interactions:1 interactions with chain A, 5 interactions with chain C- Water bridges: A:S.417, C:K.98, C:K.98, C:N.101
- Salt bridges: C:K.98, C:R.467
SO4.49: 4 residues within 4Å:- Chain C: S.139, G.140, R.142
- Ligands: NA.50
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:G.140
- Water bridges: C:I.141
- Salt bridges: C:R.142
SO4.70: 3 residues within 4Å:- Chain D: K.98, R.467
- Chain E: S.417
6 PLIP interactions:5 interactions with chain D, 1 interactions with chain E- Water bridges: D:K.98, D:K.98, D:N.101, E:S.417
- Salt bridges: D:K.98, D:R.467
SO4.71: 4 residues within 4Å:- Chain D: S.139, G.140, R.142
- Ligands: NA.72
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:G.140
- Water bridges: D:I.141
- Salt bridges: D:R.142
SO4.92: 3 residues within 4Å:- Chain E: K.98, R.467
- Chain F: S.417
6 PLIP interactions:1 interactions with chain F, 5 interactions with chain E- Water bridges: F:S.417, E:K.98, E:K.98, E:N.101
- Salt bridges: E:K.98, E:R.467
SO4.93: 4 residues within 4Å:- Chain E: S.139, G.140, R.142
- Ligands: NA.94
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:G.140
- Water bridges: E:I.141
- Salt bridges: E:R.142
SO4.114: 3 residues within 4Å:- Chain D: S.417
- Chain F: K.98, R.467
6 PLIP interactions:5 interactions with chain F, 1 interactions with chain D- Water bridges: F:K.98, F:K.98, F:N.101, D:S.417
- Salt bridges: F:K.98, F:R.467
SO4.115: 4 residues within 4Å:- Chain F: S.139, G.140, R.142
- Ligands: NA.116
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:G.140
- Water bridges: F:I.141
- Salt bridges: F:R.142
- 6 x NA: SODIUM ION(Non-functional Binders)
NA.6: 2 residues within 4Å:- Chain A: G.140
- Ligands: SO4.5
No protein-ligand interaction detected (PLIP)NA.28: 2 residues within 4Å:- Chain B: G.140
- Ligands: SO4.27
2 PLIP interactions:2 interactions with chain B- Water bridges: B:S.139, B:S.139
NA.50: 2 residues within 4Å:- Chain C: G.140
- Ligands: SO4.49
1 PLIP interactions:1 interactions with chain C- Water bridges: C:S.139
NA.72: 2 residues within 4Å:- Chain D: G.140
- Ligands: SO4.71
2 PLIP interactions:2 interactions with chain D- Water bridges: D:S.139, D:S.139
NA.94: 2 residues within 4Å:- Chain E: G.140
- Ligands: SO4.93
2 PLIP interactions:2 interactions with chain E- Water bridges: E:S.139, E:S.139
NA.116: 2 residues within 4Å:- Chain F: G.140
- Ligands: SO4.115
2 PLIP interactions:2 interactions with chain F- Water bridges: F:S.139, F:S.139
- 96 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 5 residues within 4Å:- Chain A: K.326, F.411, M.421, A.443, F.447
Ligand excluded by PLIPGOL.8: 11 residues within 4Å:- Chain A: N.332, D.334, A.335, R.338, L.363, T.364, G.365
- Chain C: K.266
- Ligands: BCT.3, GOL.9, GOL.21
Ligand excluded by PLIPGOL.9: 12 residues within 4Å:- Chain A: D.257, K.264, M.272, D.275, D.334, T.362, L.363, T.364, G.365
- Ligands: ZN.1, ZN.2, GOL.8
Ligand excluded by PLIPGOL.10: 7 residues within 4Å:- Chain A: L.385, E.388, R.452, L.479, L.480, K.482, Y.483
Ligand excluded by PLIPGOL.11: 8 residues within 4Å:- Chain A: V.28, F.114, A.115, E.116, V.151, C.152, D.153
- Ligands: GOL.17
Ligand excluded by PLIPGOL.12: 5 residues within 4Å:- Chain A: K.25, E.116, P.118, D.119
- Ligands: GOL.17
Ligand excluded by PLIPGOL.13: 4 residues within 4Å:- Chain A: N.8, T.156, N.157, E.158
Ligand excluded by PLIPGOL.14: 3 residues within 4Å:- Chain A: E.35, G.36, K.39
Ligand excluded by PLIPGOL.15: 7 residues within 4Å:- Chain A: R.7, A.12, V.13, G.14, N.108, N.145, N.147
Ligand excluded by PLIPGOL.16: 5 residues within 4Å:- Chain A: R.373, E.463, V.464, G.465
- Chain F: D.430
Ligand excluded by PLIPGOL.17: 8 residues within 4Å:- Chain A: E.116, Y.117, P.118, C.152, D.153, K.154
- Ligands: GOL.11, GOL.12
Ligand excluded by PLIPGOL.18: 5 residues within 4Å:- Chain A: D.187, V.190, D.191, R.208
- Ligands: GOL.20
Ligand excluded by PLIPGOL.19: 3 residues within 4Å:- Chain A: Q.11, A.12, K.37
Ligand excluded by PLIPGOL.20: 4 residues within 4Å:- Chain A: D.191, V.194, K.195
- Ligands: GOL.18
Ligand excluded by PLIPGOL.21: 7 residues within 4Å:- Chain A: N.332, R.338, T.364, A.366, S.424, P.433
- Ligands: GOL.8
Ligand excluded by PLIPGOL.22: 4 residues within 4Å:- Chain A: S.324, G.325, K.326
- Chain C: T.138
Ligand excluded by PLIPGOL.29: 5 residues within 4Å:- Chain B: K.326, F.411, M.421, A.443, F.447
Ligand excluded by PLIPGOL.30: 11 residues within 4Å:- Chain A: K.266
- Chain B: N.332, D.334, A.335, R.338, L.363, T.364, G.365
- Ligands: BCT.25, GOL.31, GOL.43
Ligand excluded by PLIPGOL.31: 12 residues within 4Å:- Chain B: D.257, K.264, M.272, D.275, D.334, T.362, L.363, T.364, G.365
- Ligands: ZN.23, ZN.24, GOL.30
Ligand excluded by PLIPGOL.32: 7 residues within 4Å:- Chain B: L.385, E.388, R.452, L.479, L.480, K.482, Y.483
Ligand excluded by PLIPGOL.33: 8 residues within 4Å:- Chain B: V.28, F.114, A.115, E.116, V.151, C.152, D.153
- Ligands: GOL.39
Ligand excluded by PLIPGOL.34: 5 residues within 4Å:- Chain B: K.25, E.116, P.118, D.119
- Ligands: GOL.39
Ligand excluded by PLIPGOL.35: 4 residues within 4Å:- Chain B: N.8, T.156, N.157, E.158
Ligand excluded by PLIPGOL.36: 3 residues within 4Å:- Chain B: E.35, G.36, K.39
Ligand excluded by PLIPGOL.37: 7 residues within 4Å:- Chain B: R.7, A.12, V.13, G.14, N.108, N.145, N.147
Ligand excluded by PLIPGOL.38: 5 residues within 4Å:- Chain B: R.373, E.463, V.464, G.465
- Chain E: D.430
Ligand excluded by PLIPGOL.39: 8 residues within 4Å:- Chain B: E.116, Y.117, P.118, C.152, D.153, K.154
- Ligands: GOL.33, GOL.34
Ligand excluded by PLIPGOL.40: 5 residues within 4Å:- Chain B: D.187, V.190, D.191, R.208
- Ligands: GOL.42
Ligand excluded by PLIPGOL.41: 3 residues within 4Å:- Chain B: Q.11, A.12, K.37
Ligand excluded by PLIPGOL.42: 4 residues within 4Å:- Chain B: D.191, V.194, K.195
- Ligands: GOL.40
Ligand excluded by PLIPGOL.43: 7 residues within 4Å:- Chain B: N.332, R.338, T.364, A.366, S.424, P.433
- Ligands: GOL.30
Ligand excluded by PLIPGOL.44: 4 residues within 4Å:- Chain A: T.138
- Chain B: S.324, G.325, K.326
Ligand excluded by PLIPGOL.51: 5 residues within 4Å:- Chain C: K.326, F.411, M.421, A.443, F.447
Ligand excluded by PLIPGOL.52: 11 residues within 4Å:- Chain B: K.266
- Chain C: N.332, D.334, A.335, R.338, L.363, T.364, G.365
- Ligands: BCT.47, GOL.53, GOL.65
Ligand excluded by PLIPGOL.53: 12 residues within 4Å:- Chain C: D.257, K.264, M.272, D.275, D.334, T.362, L.363, T.364, G.365
- Ligands: ZN.45, ZN.46, GOL.52
Ligand excluded by PLIPGOL.54: 7 residues within 4Å:- Chain C: L.385, E.388, R.452, L.479, L.480, K.482, Y.483
Ligand excluded by PLIPGOL.55: 8 residues within 4Å:- Chain C: V.28, F.114, A.115, E.116, V.151, C.152, D.153
- Ligands: GOL.61
Ligand excluded by PLIPGOL.56: 5 residues within 4Å:- Chain C: K.25, E.116, P.118, D.119
- Ligands: GOL.61
Ligand excluded by PLIPGOL.57: 4 residues within 4Å:- Chain C: N.8, T.156, N.157, E.158
Ligand excluded by PLIPGOL.58: 3 residues within 4Å:- Chain C: E.35, G.36, K.39
Ligand excluded by PLIPGOL.59: 7 residues within 4Å:- Chain C: R.7, A.12, V.13, G.14, N.108, N.145, N.147
Ligand excluded by PLIPGOL.60: 5 residues within 4Å:- Chain C: R.373, E.463, V.464, G.465
- Chain D: D.430
Ligand excluded by PLIPGOL.61: 8 residues within 4Å:- Chain C: E.116, Y.117, P.118, C.152, D.153, K.154
- Ligands: GOL.55, GOL.56
Ligand excluded by PLIPGOL.62: 5 residues within 4Å:- Chain C: D.187, V.190, D.191, R.208
- Ligands: GOL.64
Ligand excluded by PLIPGOL.63: 3 residues within 4Å:- Chain C: Q.11, A.12, K.37
Ligand excluded by PLIPGOL.64: 4 residues within 4Å:- Chain C: D.191, V.194, K.195
- Ligands: GOL.62
Ligand excluded by PLIPGOL.65: 7 residues within 4Å:- Chain C: N.332, R.338, T.364, A.366, S.424, P.433
- Ligands: GOL.52
Ligand excluded by PLIPGOL.66: 4 residues within 4Å:- Chain B: T.138
- Chain C: S.324, G.325, K.326
Ligand excluded by PLIPGOL.73: 5 residues within 4Å:- Chain D: K.326, F.411, M.421, A.443, F.447
Ligand excluded by PLIPGOL.74: 11 residues within 4Å:- Chain D: N.332, D.334, A.335, R.338, L.363, T.364, G.365
- Chain F: K.266
- Ligands: BCT.69, GOL.75, GOL.87
Ligand excluded by PLIPGOL.75: 12 residues within 4Å:- Chain D: D.257, K.264, M.272, D.275, D.334, T.362, L.363, T.364, G.365
- Ligands: ZN.67, ZN.68, GOL.74
Ligand excluded by PLIPGOL.76: 7 residues within 4Å:- Chain D: L.385, E.388, R.452, L.479, L.480, K.482, Y.483
Ligand excluded by PLIPGOL.77: 8 residues within 4Å:- Chain D: V.28, F.114, A.115, E.116, V.151, C.152, D.153
- Ligands: GOL.83
Ligand excluded by PLIPGOL.78: 5 residues within 4Å:- Chain D: K.25, E.116, P.118, D.119
- Ligands: GOL.83
Ligand excluded by PLIPGOL.79: 4 residues within 4Å:- Chain D: N.8, T.156, N.157, E.158
Ligand excluded by PLIPGOL.80: 3 residues within 4Å:- Chain D: E.35, G.36, K.39
Ligand excluded by PLIPGOL.81: 7 residues within 4Å:- Chain D: R.7, A.12, V.13, G.14, N.108, N.145, N.147
Ligand excluded by PLIPGOL.82: 5 residues within 4Å:- Chain C: D.430
- Chain D: R.373, E.463, V.464, G.465
Ligand excluded by PLIPGOL.83: 8 residues within 4Å:- Chain D: E.116, Y.117, P.118, C.152, D.153, K.154
- Ligands: GOL.77, GOL.78
Ligand excluded by PLIPGOL.84: 5 residues within 4Å:- Chain D: D.187, V.190, D.191, R.208
- Ligands: GOL.86
Ligand excluded by PLIPGOL.85: 3 residues within 4Å:- Chain D: Q.11, A.12, K.37
Ligand excluded by PLIPGOL.86: 4 residues within 4Å:- Chain D: D.191, V.194, K.195
- Ligands: GOL.84
Ligand excluded by PLIPGOL.87: 7 residues within 4Å:- Chain D: N.332, R.338, T.364, A.366, S.424, P.433
- Ligands: GOL.74
Ligand excluded by PLIPGOL.88: 4 residues within 4Å:- Chain D: S.324, G.325, K.326
- Chain F: T.138
Ligand excluded by PLIPGOL.95: 5 residues within 4Å:- Chain E: K.326, F.411, M.421, A.443, F.447
Ligand excluded by PLIPGOL.96: 11 residues within 4Å:- Chain D: K.266
- Chain E: N.332, D.334, A.335, R.338, L.363, T.364, G.365
- Ligands: BCT.91, GOL.97, GOL.109
Ligand excluded by PLIPGOL.97: 12 residues within 4Å:- Chain E: D.257, K.264, M.272, D.275, D.334, T.362, L.363, T.364, G.365
- Ligands: ZN.89, ZN.90, GOL.96
Ligand excluded by PLIPGOL.98: 7 residues within 4Å:- Chain E: L.385, E.388, R.452, L.479, L.480, K.482, Y.483
Ligand excluded by PLIPGOL.99: 8 residues within 4Å:- Chain E: V.28, F.114, A.115, E.116, V.151, C.152, D.153
- Ligands: GOL.105
Ligand excluded by PLIPGOL.100: 5 residues within 4Å:- Chain E: K.25, E.116, P.118, D.119
- Ligands: GOL.105
Ligand excluded by PLIPGOL.101: 4 residues within 4Å:- Chain E: N.8, T.156, N.157, E.158
Ligand excluded by PLIPGOL.102: 3 residues within 4Å:- Chain E: E.35, G.36, K.39
Ligand excluded by PLIPGOL.103: 7 residues within 4Å:- Chain E: R.7, A.12, V.13, G.14, N.108, N.145, N.147
Ligand excluded by PLIPGOL.104: 5 residues within 4Å:- Chain B: D.430
- Chain E: R.373, E.463, V.464, G.465
Ligand excluded by PLIPGOL.105: 8 residues within 4Å:- Chain E: E.116, Y.117, P.118, C.152, D.153, K.154
- Ligands: GOL.99, GOL.100
Ligand excluded by PLIPGOL.106: 5 residues within 4Å:- Chain E: D.187, V.190, D.191, R.208
- Ligands: GOL.108
Ligand excluded by PLIPGOL.107: 3 residues within 4Å:- Chain E: Q.11, A.12, K.37
Ligand excluded by PLIPGOL.108: 4 residues within 4Å:- Chain E: D.191, V.194, K.195
- Ligands: GOL.106
Ligand excluded by PLIPGOL.109: 7 residues within 4Å:- Chain E: N.332, R.338, T.364, A.366, S.424, P.433
- Ligands: GOL.96
Ligand excluded by PLIPGOL.110: 4 residues within 4Å:- Chain D: T.138
- Chain E: S.324, G.325, K.326
Ligand excluded by PLIPGOL.117: 5 residues within 4Å:- Chain F: K.326, F.411, M.421, A.443, F.447
Ligand excluded by PLIPGOL.118: 11 residues within 4Å:- Chain E: K.266
- Chain F: N.332, D.334, A.335, R.338, L.363, T.364, G.365
- Ligands: BCT.113, GOL.119, GOL.131
Ligand excluded by PLIPGOL.119: 12 residues within 4Å:- Chain F: D.257, K.264, M.272, D.275, D.334, T.362, L.363, T.364, G.365
- Ligands: ZN.111, ZN.112, GOL.118
Ligand excluded by PLIPGOL.120: 7 residues within 4Å:- Chain F: L.385, E.388, R.452, L.479, L.480, K.482, Y.483
Ligand excluded by PLIPGOL.121: 8 residues within 4Å:- Chain F: V.28, F.114, A.115, E.116, V.151, C.152, D.153
- Ligands: GOL.127
Ligand excluded by PLIPGOL.122: 5 residues within 4Å:- Chain F: K.25, E.116, P.118, D.119
- Ligands: GOL.127
Ligand excluded by PLIPGOL.123: 4 residues within 4Å:- Chain F: N.8, T.156, N.157, E.158
Ligand excluded by PLIPGOL.124: 3 residues within 4Å:- Chain F: E.35, G.36, K.39
Ligand excluded by PLIPGOL.125: 7 residues within 4Å:- Chain F: R.7, A.12, V.13, G.14, N.108, N.145, N.147
Ligand excluded by PLIPGOL.126: 5 residues within 4Å:- Chain A: D.430
- Chain F: R.373, E.463, V.464, G.465
Ligand excluded by PLIPGOL.127: 8 residues within 4Å:- Chain F: E.116, Y.117, P.118, C.152, D.153, K.154
- Ligands: GOL.121, GOL.122
Ligand excluded by PLIPGOL.128: 5 residues within 4Å:- Chain F: D.187, V.190, D.191, R.208
- Ligands: GOL.130
Ligand excluded by PLIPGOL.129: 3 residues within 4Å:- Chain F: Q.11, A.12, K.37
Ligand excluded by PLIPGOL.130: 4 residues within 4Å:- Chain F: D.191, V.194, K.195
- Ligands: GOL.128
Ligand excluded by PLIPGOL.131: 7 residues within 4Å:- Chain F: N.332, R.338, T.364, A.366, S.424, P.433
- Ligands: GOL.118
Ligand excluded by PLIPGOL.132: 4 residues within 4Å:- Chain E: T.138
- Chain F: S.324, G.325, K.326
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhan, C. et al., Crystal Structure and Function of Caenorhabditis Elegans Leucine Aminopeptidase. To be Published
- Release Date
- 2006-08-15
- Peptides
- Leucine aminopeptidase 1: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 6 x BCT: BICARBONATE ION(Non-functional Binders)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 6 x NA: SODIUM ION(Non-functional Binders)
- 96 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhan, C. et al., Crystal Structure and Function of Caenorhabditis Elegans Leucine Aminopeptidase. To be Published
- Release Date
- 2006-08-15
- Peptides
- Leucine aminopeptidase 1: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A