SMTL ID : 2hcv.1

Crystal structure of L-rhamnose isomerase from Pseudomonas stutzeri with metal ion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: E.219, D.254, H.281, D.327 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.219, A:D.254, A:H.281, A:D.327, H2O.9 ZN.2: 4 residues within 4Å: Chain A: K.221, D.254, H.257, D.289 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.257, A:D.289, H2O.7, H2O.9, H2O.9 ZN.3: 5 residues within 4Å: Chain B: E.219, D.254, H.257, H.281, D.327 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.219, B:D.254, B:H.281, B:D.327, H2O.27 ZN.4: 4 residues within 4Å: Chain B: K.221, H.257, D.289, D.291 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.257, B:D.289, H2O.21, H2O.25, H2O.27 ZN.5: 5 residues within 4Å: Chain C: E.219, D.254, H.257, H.281, D.327 6 PLIP interactions: 4 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.219, C:D.254, C:H.281, C:D.327, H2O.40, H2O.48 ZN.6: 4 residues within 4Å: Chain C: D.254, H.257, D.289, D.291 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:H.257, C:D.289, H2O.37, H2O.43, H2O.48 ZN.7: 6 residues within 4Å: Chain D: E.219, D.254, H.257, H.281, D.327 Ligands: ZN.8 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.219, D:D.254, D:H.281, D:D.327, H2O.51 ZN.8: 5 residues within 4Å: Chain D: K.221, D.254, H.257, D.289 Ligands: ZN.7 6 PLIP interactions: 2 interactions with chain D, 4 Ligand-Water interactions Metal complexes: D:H.257, D:D.289, H2O.51, H2O.52, H2O.53, H2O.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshida, H. et al., The Structures of l-Rhamnose Isomerase from Pseudomonas stutzeri in Complexes with l-Rhamnose and d-Allose Provide Insights into Broad Substrate Specificity. J.Mol.Biol. (2007)

Release Date

2006-12-19

Peptides

L-rhamnose isomerase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

L-rhamnose isomerase

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