SMTL ID : 2i57.1

Crystal Structure of L-Rhamnose Isomerase from Pseudomonas stutzeri in Complex with D-Allose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-tetramer

Ligands

4 x AOS: D-ALLOSE(Non-covalent)

AOS.1: 14 residues within 4Å: Chain A: W.57, H.101, F.131, W.179, E.219, K.221, D.254, H.257, H.281, D.289, D.327 Chain B: F.66 Ligands: ZN.2, ZN.3 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Water bridges: B:R.65, A:D.254, A:D.291 Hydrogen bonds: A:E.219 AOS.4: 14 residues within 4Å: Chain A: F.66 Chain B: W.57, H.101, F.131, W.179, E.219, K.221, D.254, H.257, H.281, D.289, D.327 Ligands: ZN.5, ZN.6 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.219 Water bridges: B:D.289, B:D.291, B:D.291 AOS.7: 14 residues within 4Å: Chain C: W.57, H.101, F.131, W.179, E.219, K.221, D.254, H.257, H.281, D.289, D.327 Chain D: F.66 Ligands: ZN.8, ZN.9 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:E.219 Water bridges: C:D.289, C:D.291, C:D.291, D:R.65 AOS.10: 14 residues within 4Å: Chain C: F.66 Chain D: W.57, H.101, W.104, W.179, E.219, K.221, D.254, H.257, H.281, D.289, D.327 Ligands: ZN.11, ZN.12 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:E.219 Water bridges: C:R.65

8 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: E.219, D.254, H.257, H.281, D.327 Ligands: AOS.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.219, A:D.254, A:H.281, A:D.327 ZN.3: 6 residues within 4Å: Chain A: K.221, D.254, H.257, D.289, D.291 Ligands: AOS.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.257, A:D.289, A:D.289, H2O.1, H2O.12 ZN.5: 6 residues within 4Å: Chain B: E.219, D.254, H.257, H.281, D.327 Ligands: AOS.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.219, B:D.254, B:H.281, B:D.327 ZN.6: 5 residues within 4Å: Chain B: D.254, H.257, D.289, D.291 Ligands: AOS.4 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.257, B:D.289, B:D.289, H2O.21, H2O.25 ZN.8: 6 residues within 4Å: Chain C: E.219, D.254, H.257, H.281, D.327 Ligands: AOS.7 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.219, C:D.254, C:H.281, C:D.327 ZN.9: 6 residues within 4Å: Chain C: K.221, D.254, H.257, D.289, D.291 Ligands: AOS.7 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.257, C:D.289, C:D.289, H2O.33, H2O.35 ZN.11: 6 residues within 4Å: Chain D: E.219, D.254, H.257, H.281, D.327 Ligands: AOS.10 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.219, D:D.254, D:H.281, D:D.327 ZN.12: 6 residues within 4Å: Chain D: K.221, D.254, H.257, D.289, D.291 Ligands: AOS.10 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.257, D:D.289, D:D.289, H2O.48, H2O.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshida, H. et al., The Structures of l-Rhamnose Isomerase from Pseudomonas stutzeri in Complexes with l-Rhamnose and d-Allose Provide Insights into Broad Substrate Specificity. J.Mol.Biol. (2007)

Release Date

2006-12-19

Peptides

L-rhamnose isomerase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

L-rhamnose isomerase

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