SMTL ID : 2hi8.1

human formylglycine generating enzyme, C336S mutant, bromide co-crystallization

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

1 x CYS- THR- PRO- SER- ARG: CTPSR(Non-covalent)

CYS-THR-PRO-SER-ARG.1: 21 residues within 4Å: Chain A: A.64, F.67, D.69, S.70, F.71, A.91, W.95, W.214, K.244, C.256, R.258, N.267, T.268, D.270, S.271, S.272, A.273, N.275 Ligands: BR.3, BR.8, CL.20 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:F.67, A:F.71, A:F.71, A:W.95, A:A.273 Hydrogen bonds: A:D.69, A:D.69, A:N.267, A:N.267, A:T.268, A:D.270, A:S.271, A:S.271, A:S.271, A:N.275, A:N.275 Water bridges: A:W.214, A:K.244, A:K.244, A:S.265, A:N.267, A:N.267, A:S.272, A:S.272, A:N.275

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: T.49, E.52, K.53, N.56 No protein-ligand interaction detected (PLIP)

15 x BR: BROMIDE ION(Non-covalent)(Non-functional Binders)

BR.3: 9 residues within 4Å: Chain A: W.214, S.248, M.250, S.251, Y.255, C.256, N.275 Ligands: CYS-THR-PRO-SER-ARG.1, CL.20 Ligand excluded by PLIP BR.4: 5 residues within 4Å: Chain A: W.161, G.162, N.163, K.164, P.167 Ligand excluded by PLIP BR.5: 3 residues within 4Å: Chain A: V.130, R.139, L.140 Ligand excluded by PLIP BR.6: 3 residues within 4Å: Chain A: T.18, R.151, R.157 Ligand excluded by PLIP BR.7: 1 residues within 4Å: Chain A: K.24 Ligand excluded by PLIP BR.8: 4 residues within 4Å: Chain A: W.94, W.95 Ligands: CYS-THR-PRO-SER-ARG.1, CYS-THR-PRO-SER-ARG.1 Ligand excluded by PLIP BR.9: 2 residues within 4Å: Chain A: V.130, T.134 Ligand excluded by PLIP BR.10: 3 residues within 4Å: Chain A: R.139, A.282, D.283 Ligand excluded by PLIP BR.11: 5 residues within 4Å: Chain A: H.115, R.116, P.117, D.118, H.119 Ligand excluded by PLIP BR.12: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP BR.13: 2 residues within 4Å: Chain A: A.198, F.199 Ligand excluded by PLIP BR.14: 2 residues within 4Å: Chain A: N.127, P.269 Ligand excluded by PLIP BR.15: 4 residues within 4Å: Chain A: S.111, T.112, H.115, R.116 Ligand excluded by PLIP BR.16: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP BR.17: 2 residues within 4Å: Chain A: E.228, E.229 Ligand excluded by PLIP

2 x CA: CALCIUM ION(Non-covalent)

CA.18: 6 residues within 4Å: Chain A: E.45, N.208, I.209, G.211, A.213, E.215 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.45, A:N.208, A:G.211, A:A.213, A:E.215, H2O.2 CA.19: 4 residues within 4Å: Chain A: N.174, I.175, D.188, F.190 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:I.175, A:D.188, A:F.190, H2O.1, H2O.1

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.20: 9 residues within 4Å: Chain A: W.214, S.248, M.250, S.251, Y.255, C.256, N.275 Ligands: CYS-THR-PRO-SER-ARG.1, BR.3 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roeser, D. et al., Probing the oxygen-binding site of the human formylglycine-generating enzyme using halide ions. Acta Crystallogr.,Sect.D (2007)

Release Date

2007-05-01

Peptides

Sulfatase-modifying factor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Sulfatase-modifying factor 1

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