SMTL ID : 2hiz.1 (2 other biounits)

Crystal Structure of human beta-secretase (BACE) in the presence of an inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: R.370, V.372, K.384 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.370, A:K.384 PO4.2: 5 residues within 4Å: Chain A: N.296, R.298, L.326, S.388 Ligands: LIJ.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.298, A:S.388, A:S.388, A:S.388

1 x LIJ: BENZYL [(1S)-2-({(1S,2R)-1-BENZYL-2-HYDROXY-3-[(3-METHOXYBENZYL)AMINO]PROPYL}AMINO)-2-OXO-1-{[(1-PROPYLBUTYL)SULFONYL]METHYL}ETHYL]CARBAMATE(Non-covalent)

LIJ.3: 23 residues within 4Å: Chain A: G.74, Q.75, G.76, L.93, D.95, G.97, S.98, P.133, Y.134, T.135, Q.136, F.171, W.178, I.181, I.189, Y.261, I.289, D.291, G.293, T.294, T.295, R.298 Ligands: PO4.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.134, A:T.135, A:Q.136, A:F.171, A:W.178, A:I.181, A:Y.261 Hydrogen bonds: A:D.95, A:T.135, A:T.135, A:Q.136, A:D.291, A:G.293 Water bridges: A:T.295, A:R.298 pi-Stacking: A:Y.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Freskos, J.N. et al., Design of potent inhibitors of human beta-secretase. Part 1. Bioorg.Med.Chem.Lett. (2007)

Release Date

2007-01-23

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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