SMTL ID : 2hj3.1 (2 other biounits)

Structure of the Arabidopsis Thaliana Erv1 Thiol Oxidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: T.33, R.34 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.34 Water bridges: A:Q.35 SO4.2: 3 residues within 4Å: Chain A: K.94, L.95 Ligands: FAD.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.95 Water bridges: A:N.89 Salt bridges: A:K.94 SO4.3: 4 residues within 4Å: Chain A: S.48, R.49, K.61, R.65 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.48 Salt bridges: A:R.49, A:K.61, A:R.65 SO4.4: 4 residues within 4Å: Chain A: H.83, N.86, R.90, V.96 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.83, A:N.86 Water bridges: A:R.90, A:R.90 Salt bridges: A:H.83, A:R.90 SO4.5: 3 residues within 4Å: Chain A: E.42, T.45, R.49 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Water bridges: A:R.49, B:K.38 Salt bridges: A:R.49 SO4.6: 5 residues within 4Å: Chain A: Q.35, K.38, D.39 Chain B: E.42, R.49 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Water bridges: B:E.42, B:E.42, B:R.49 Salt bridges: B:R.49, A:K.38 Hydrogen bonds: A:Q.35, A:D.39 SO4.7: 2 residues within 4Å: Chain A: H.59, E.62 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.62 Salt bridges: A:H.59 SO4.8: 1 residues within 4Å: Chain A: K.41 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.41 SO4.10: 2 residues within 4Å: Chain B: T.33, R.34 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.34 Water bridges: B:Q.35 Salt bridges: B:R.34 SO4.11: 7 residues within 4Å: Chain B: K.37, K.41, A.69, Q.70, A.71, G.72, E.76 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.71, B:G.72 Salt bridges: B:K.41 SO4.12: 5 residues within 4Å: Chain B: H.83, N.86, R.90, V.96, C.99 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.86 Water bridges: B:T.87, B:R.90 Salt bridges: B:H.83, B:R.90 SO4.13: 3 residues within 4Å: Chain B: R.49, K.61, R.65 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:R.49, B:K.61, B:R.65

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.9: 23 residues within 4Å: Chain A: K.10, G.14, R.15, T.17, W.18, H.22, Y.51, E.55, C.56, H.59, F.60, C.82, H.85, N.86, V.88, N.89, L.92, K.94, F.97, V.102, R.105, W.106 Ligands: SO4.2 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:T.17, A:W.18, A:W.18, A:F.60 Hydrogen bonds: A:K.10, A:W.18, A:W.18, A:E.55, A:E.55, A:H.59, A:H.85, A:N.86, A:N.89, A:R.105 Water bridges: A:E.11, A:R.15, A:K.94, A:K.94 Salt bridges: A:R.15, A:H.85, A:K.94 pi-Stacking: A:H.22, A:Y.51, A:H.85, A:F.97, A:F.97 FAD.14: 22 residues within 4Å: Chain B: K.10, E.11, G.14, R.15, T.17, W.18, H.22, Y.51, E.55, C.56, H.59, F.60, C.82, H.85, N.86, V.88, N.89, L.92, K.94, F.97, R.105, W.106 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:T.17, B:W.18, B:F.60 Hydrogen bonds: B:K.10, B:G.14, B:W.18, B:E.55, B:C.82, B:N.89, B:K.94 Salt bridges: B:R.15, B:H.85, B:K.94 pi-Stacking: B:Y.51, B:H.85, B:F.97 pi-Cation interactions: B:H.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vitu, E. et al., Gain of Function in an ERV/ALR Sulfhydryl Oxidase by Molecular Engineering of the Shuttle Disulfide. J.Mol.Biol. (2006)

Release Date

2006-08-22

Peptides

Sulfhydryl oxidase Erv1p: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Sulfhydryl oxidase Erv1p

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