SMTL ID : 2hj3.3 (2 other biounits)

Structure of the Arabidopsis Thaliana Erv1 Thiol Oxidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: T.33, R.34 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: K.94, L.95 Chain C: R.101 Ligands: FAD.9 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: S.48, R.49, K.61, R.65 Ligand excluded by PLIP SO4.4: 5 residues within 4Å: Chain A: H.83, N.86, R.90, V.96 Chain C: R.90 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: E.42, T.45, R.49 Ligand excluded by PLIP SO4.6: 5 residues within 4Å: Chain A: Q.35, K.38, D.39 Chain B: E.42, R.49 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain A: H.59, E.62 Ligand excluded by PLIP SO4.8: 1 residues within 4Å: Chain A: K.41 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain B: T.33, R.34 Ligand excluded by PLIP SO4.11: 7 residues within 4Å: Chain B: K.37, K.41, A.69, Q.70, A.71, G.72, E.76 Ligand excluded by PLIP SO4.12: 5 residues within 4Å: Chain B: H.83, N.86, R.90, V.96, C.99 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain B: R.49, K.61, R.65 Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain C: T.33, R.34 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain A: R.101 Chain C: K.94, L.95 Ligands: FAD.23 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain C: S.48, R.49, K.61, R.65 Ligand excluded by PLIP SO4.18: 5 residues within 4Å: Chain A: R.90 Chain C: H.83, N.86, R.90, V.96 Ligand excluded by PLIP SO4.19: 3 residues within 4Å: Chain C: E.42, T.45, R.49 Ligand excluded by PLIP SO4.20: 5 residues within 4Å: Chain C: Q.35, K.38, D.39 Chain D: E.42, R.49 Ligand excluded by PLIP SO4.21: 2 residues within 4Å: Chain C: H.59, E.62 Ligand excluded by PLIP SO4.22: 1 residues within 4Å: Chain C: K.41 Ligand excluded by PLIP SO4.24: 2 residues within 4Å: Chain D: T.33, R.34 Ligand excluded by PLIP SO4.25: 7 residues within 4Å: Chain D: K.37, K.41, A.69, Q.70, A.71, G.72, E.76 Ligand excluded by PLIP SO4.26: 5 residues within 4Å: Chain D: H.83, N.86, R.90, V.96, C.99 Ligand excluded by PLIP SO4.27: 3 residues within 4Å: Chain D: R.49, K.61, R.65 Ligand excluded by PLIP

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.9: 23 residues within 4Å: Chain A: K.10, G.14, R.15, T.17, W.18, H.22, Y.51, E.55, C.56, H.59, F.60, C.82, H.85, N.86, V.88, N.89, L.92, K.94, F.97, V.102, R.105, W.106 Ligands: SO4.2 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:T.17, A:W.18, A:W.18, A:F.60 Hydrogen bonds: A:K.10, A:W.18, A:W.18, A:E.55, A:E.55, A:H.59, A:H.85, A:N.86, A:N.89, A:R.105 Water bridges: A:E.11, A:R.15, A:K.94, A:K.94 Salt bridges: A:R.15, A:H.85, A:K.94 pi-Stacking: A:H.22, A:Y.51, A:H.85, A:F.97, A:F.97 FAD.14: 22 residues within 4Å: Chain B: K.10, E.11, G.14, R.15, T.17, W.18, H.22, Y.51, E.55, C.56, H.59, F.60, C.82, H.85, N.86, V.88, N.89, L.92, K.94, F.97, R.105, W.106 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:T.17, B:W.18, B:F.60 Hydrogen bonds: B:K.10, B:G.14, B:W.18, B:E.55, B:C.82, B:N.89, B:K.94 Salt bridges: B:R.15, B:H.85, B:K.94 pi-Stacking: B:Y.51, B:H.85, B:F.97 pi-Cation interactions: B:H.85 FAD.23: 23 residues within 4Å: Chain C: K.10, G.14, R.15, T.17, W.18, H.22, Y.51, E.55, C.56, H.59, F.60, C.82, H.85, N.86, V.88, N.89, L.92, K.94, F.97, V.102, R.105, W.106 Ligands: SO4.16 22 PLIP interactions: 22 interactions with chain C Hydrophobic interactions: C:T.17, C:W.18, C:W.18, C:F.60 Hydrogen bonds: C:K.10, C:W.18, C:W.18, C:E.55, C:N.86, C:N.89, C:R.105 Water bridges: C:R.15, C:K.94, C:K.94 Salt bridges: C:R.15, C:H.85, C:K.94 pi-Stacking: C:H.22, C:Y.51, C:H.85, C:F.97, C:F.97 FAD.28: 22 residues within 4Å: Chain D: K.10, E.11, G.14, R.15, T.17, W.18, H.22, Y.51, E.55, C.56, H.59, F.60, C.82, H.85, N.86, V.88, N.89, L.92, K.94, F.97, R.105, W.106 22 PLIP interactions: 22 interactions with chain D Hydrophobic interactions: D:T.17, D:W.18, D:F.60 Hydrogen bonds: D:K.10, D:G.14, D:W.18, D:E.55, D:E.55, D:H.59, D:C.82, D:H.85, D:N.89, D:K.94 Water bridges: D:E.11, D:E.11 Salt bridges: D:R.15, D:H.85, D:K.94 pi-Stacking: D:Y.51, D:H.85, D:F.97 pi-Cation interactions: D:H.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vitu, E. et al., Gain of Function in an ERV/ALR Sulfhydryl Oxidase by Molecular Engineering of the Shuttle Disulfide. J.Mol.Biol. (2006)

Release Date

2006-08-22

Peptides

Sulfhydryl oxidase Erv1p: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Sulfhydryl oxidase Erv1p

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