SMTL ID : 2hos.1

Phage-Selected Homeodomain Bound to Unmodified DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: C.18, G.19 Ligands: 3MO.3 No protein-ligand interaction detected (PLIP) GOL.2: 6 residues within 4Å: Chain A: T.11, A.12 Chain C: W.51, N.54, M.55, K.58 No protein-ligand interaction detected (PLIP) GOL.4: 3 residues within 4Å: Chain D: G.42, L.43, N.44 2 PLIP interactions: 2 interactions with chain D Water bridges: D:S.38, D:L.43 GOL.5: 3 residues within 4Å: Chain D: R.27, Y.28, R.56 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.27, D:R.56 Water bridges: D:Y.28

1 x 3MO: 3-METHYL-1,3-OXAZOLIDIN-2-ONE(Non-covalent)

3MO.3: 3 residues within 4Å: Chain A: C.18 Chain D: Y.28 Ligands: GOL.1 1 PLIP interactions: 1 interactions with chain D pi-Stacking: D:Y.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Simon, M.D. et al., Structure and properties of a re-engineered homeodomain protein-DNA interface. Acs Chem.Biol. (2006)

Release Date

2006-12-12

Peptides

Segmentation polarity homeobox protein engrailed: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

D
B

Segmentation polarity homeobox protein engrailed

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