SMTL ID : 2i6t.2 (1 other biounit)

Orthorhombic Structure of the LDH domain of Human Ubiquitin-conjugating Enzyme E2-like Isoform A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: A.168, Q.169, T.170, S.171, E.194 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:A.168, A:T.170, A:S.171 Water bridges: A:Q.169, A:Q.169, A:T.170, A:S.171, A:E.194 SO4.2: 4 residues within 4Å: Chain A: V.196, S.197, S.200 Ligands: GOL.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.197, A:S.197, A:S.200 SO4.8: 5 residues within 4Å: Chain B: A.168, Q.169, T.170, S.171, E.194 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.170, B:S.171, B:S.171, B:E.194 SO4.9: 4 residues within 4Å: Chain B: V.196, S.197, S.200 Ligands: GOL.11 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.197, B:S.197, B:S.200 Water bridges: B:S.197, B:S.197, B:S.200

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: I.149, G.150, C.151, N.152, L.153, D.154, Q.181, Q.217, S.225 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:I.149, A:N.152, A:L.153, A:D.154, A:D.154, A:Q.217, A:S.225 Water bridges: A:Q.181 GOL.4: 4 residues within 4Å: Chain A: T.199, S.200, Q.203 Ligands: SO4.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.199, A:T.199, A:T.199, A:Q.203 Water bridges: A:S.200, A:S.200 GOL.5: 4 residues within 4Å: Chain A: K.70, D.71, L.72, S.73 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.70, A:L.72, A:S.73 Water bridges: A:D.71, A:S.73 GOL.6: 9 residues within 4Å: Chain A: D.57, I.60, F.61 Chain B: N.152, L.153, Q.156, R.157, L.224, S.225 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.152, B:S.225, A:D.57 GOL.7: 7 residues within 4Å: Chain A: Y.250, Y.251, P.262, V.273, I.274, K.275, T.276 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.276, A:T.276 GOL.10: 9 residues within 4Å: Chain B: I.149, G.150, C.151, N.152, L.153, D.154, Q.181, Q.217, S.225 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:N.152, B:L.153, B:D.154, B:D.154, B:Q.217, B:S.225, B:S.225 GOL.11: 4 residues within 4Å: Chain B: T.199, S.200, Q.203 Ligands: SO4.9 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.199, B:T.199, B:T.199, B:Q.203 Water bridges: B:S.200, B:S.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Avvakumov, G.V. et al., Structural Investigation into the L-lactate Dehydrogenase Domain of Human Ubiquitin-conjugating Enzyme E2-like Isoform A. To be Published

Release Date

2006-10-24

Peptides

UBIQUITIN-CONJUGATING ENZYME E2-LIKE ISOFORM A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

UBIQUITIN-CONJUGATING ENZYME E2-LIKE ISOFORM A

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