SMTL ID : 3dl2.1

Hexagonal structure of the LDH domain of Human Ubiquitin-conjugating Enzyme E2-like Isoform A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: N.62, L.63, V.66 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.62 NA.3: 3 residues within 4Å: Chain B: N.62, L.63, V.66 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.62

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 3 residues within 4Å: Chain A: H.77, Q.117, H.118 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.117, A:H.118 Salt bridges: A:H.77, A:H.118 PO4.4: 3 residues within 4Å: Chain B: H.77, Q.117, H.118 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.77, B:Q.117, B:H.118 Salt bridges: B:H.77, B:H.118 PO4.5: 1 residues within 4Å: Chain B: H.118 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:H.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walker, J.R. et al., Structural Investigation Into the L-Lactate Dehydrogenase Domain of Human Ubiquitin-Conjugating Enzyme E2-Like Isoform A. To be Published

Release Date

2008-07-15

Peptides

Ubiquitin-conjugating enzyme E2 variant 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin-conjugating enzyme E2 variant 3

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