SMTL ID : 2ivd.2 (1 other biounit)

Structure of protoporphyrinogen oxidase from Myxococcus xanthus with acifluorfen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: R.200 Ligands: GOL.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.200 Water bridges: A:R.142, A:R.142 GOL.4: 1 residues within 4Å: Chain A: R.208 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.208, A:R.208 GOL.5: 4 residues within 4Å: Chain A: R.200, L.204, R.208 Ligands: GOL.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.200, A:R.208, A:R.208

1 x ACJ: 5-[2-CHLORO-4-(TRIFLUOROMETHYL)PHENOXY]-2-NITROBENZOIC ACID(Non-covalent)

ACJ.2: 17 residues within 4Å: Chain A: R.102, T.173, G.174, I.175, Y.176, A.177, I.318, F.336, G.337, F.338, L.339, L.349, A.351, I.352, M.372, I.419 Ligands: FAD.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.336, A:L.339, A:L.339, A:I.352, A:I.352 Hydrogen bonds: A:G.337

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.3: 29 residues within 4Å: Chain A: V.22, G.23, G.25, I.26, S.27, L.45, E.46, S.47, G.53, A.54, G.68, P.69, N.70, S.71, A.256, R.257, V.258, A.289, A.290, P.291, A.294, V.320, I.419, G.447, N.448, V.453, G.454, L.455 Ligands: ACJ.2 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:V.320, A:I.419 Hydrogen bonds: A:G.25, A:S.27, A:S.27, A:S.27, A:S.47, A:S.48, A:A.54, A:N.70, A:S.71, A:S.71, A:V.258, A:V.258, A:N.448, A:N.448, A:L.455 Water bridges: A:I.26, A:I.26, A:G.28, A:N.70

1 x TWN: (3S)-3-[(2S,3S,4R)-3,4-DIMETHYLTETRAHYDROFURAN-2-YL]BUTYL LAURATE(Non-covalent)

TWN.6: 7 residues within 4Å: Chain A: L.132, R.133, A.135, G.136, L.138, F.139, R.141 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.135, A:F.139, A:F.139 Salt bridges: A:R.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Corradi, H.R. et al., Crystal Structure of Protoporphyrinogen Oxidase from Myxococcus Xanthus and its Complex with the Inhibitor Acifluorfen. J.Biol.Chem. (2006)

Release Date

2006-10-17

Peptides

PROTOPORPHYRINOGEN OXIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

PROTOPORPHYRINOGEN OXIDASE

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