SMTL ID : 2ive.2 (1 other biounit)

Structure of protoporphyrinogen oxidase from Myxococcus xanthus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 31 residues within 4Å: Chain A: V.22, G.23, G.24, G.25, I.26, S.27, L.45, E.46, S.47, S.48, G.53, A.54, V.55, G.68, P.69, N.70, S.71, A.256, R.257, V.258, A.289, A.290, P.291, A.294, I.318, I.419, G.447, N.448, G.454, L.455 Ligands: TWN.6 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:I.318, A:I.419 Hydrogen bonds: A:G.24, A:G.25, A:S.27, A:S.27, A:S.27, A:S.47, A:S.48, A:A.54, A:N.70, A:S.71, A:S.71, A:V.258, A:V.258, A:N.448, A:N.448, A:G.454, A:L.455 Water bridges: A:G.28, A:V.55, A:V.55

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 1 residues within 4Å: Chain A: R.208 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.208, A:R.208 GOL.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GOL.4: 3 residues within 4Å: Chain A: R.200, L.204, R.208 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.200, A:R.208, A:R.208

2 x TWN: (3S)-3-[(2S,3S,4R)-3,4-DIMETHYLTETRAHYDROFURAN-2-YL]BUTYL LAURATE(Non-functional Binders)(Non-covalent)

TWN.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) TWN.6: 14 residues within 4Å: Chain A: R.102, T.173, G.174, I.175, I.318, F.336, G.337, F.338, L.339, G.350, A.351, I.352, M.372 Ligands: FAD.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.175, A:I.318, A:F.336, A:F.336, A:L.339, A:L.339, A:L.339, A:I.352, A:M.372

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Corradi, H.R. et al., Crystal Structure of Protoporphyrinogen Oxidase from Myxococcus Xanthus and its Complex with the Inhibitor Acifluorfen. J.Biol.Chem. (2006)

Release Date

2006-10-17

Peptides

PROTOPORPHYRINOGEN OXIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

PROTOPORPHYRINOGEN OXIDASE

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