SMTL ID : 2iw1.1

Crystal Structure of WaaG, a glycosyltransferase involved in lipopolysaccharide biosynthesis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x U2F: URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE(Non-covalent)

U2F.1: 26 residues within 4Å: Chain A: F.13, G.14, G.15, L.16, R.18, D.19, F.97, A.99, L.143, R.173, V.202, S.204, R.208, K.209, V.234, G.235, G.260, R.261, V.264, E.281, A.282, A.283, G.284, I.285, V.286, E.289 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:F.13, A:V.202 Hydrogen bonds: A:G.15, A:L.16, A:D.19, A:D.19, A:R.173, A:R.261, A:R.261, A:E.281, A:A.282, A:A.283, A:G.284, A:I.285, A:V.286 Water bridges: A:R.18, A:R.18, A:S.204, A:S.204, A:S.204, A:E.289 Salt bridges: A:R.208, A:K.209, A:K.209 Halogen bonds: A:R.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martinez-Fleites, C. et al., Insights Into the Synthesis of Lipopolysaccharide and Antibiotics Through the Structures of Two Retaining Glycosyltransferases from Family Gt4. Chem.Biol. (2006)

Release Date

2006-10-11

Peptides

LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS PROTEIN RFAG: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS PROTEIN RFAG

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