- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x CU: COPPER (II) ION(Non-covalent)
- 2 x CUZ: (MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION(Non-covalent)
CUZ.3: 8 residues within 4Å:- Chain A: H.135, H.136, H.184, N.246, H.327, H.382, H.433, H.494
9 PLIP interactions:7 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.135, A:H.136, A:H.184, A:H.327, A:H.382, A:H.433, A:H.494, H2O.9, H2O.11
CUZ.16: 8 residues within 4Å:- Chain B: H.135, H.136, H.184, N.246, H.327, H.382, H.433, H.494
9 PLIP interactions:7 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.135, B:H.136, B:H.184, B:H.327, B:H.382, B:H.433, B:H.494, H2O.24, H2O.25
- 5 x CA: CALCIUM ION(Non-covalent)
CA.4: 2 residues within 4Å:- Chain A: K.454, E.469
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:K.454, A:E.469, H2O.12, H2O.29, H2O.29
CA.5: 5 residues within 4Å:- Chain A: N.92, R.93, D.130
- Chain B: R.93, S.95
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Metal complexes: A:D.130, B:R.93
CA.6: 5 residues within 4Å:- Chain A: Y.261, E.264, M.272, D.278, N.325
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:Y.261, A:E.264, A:E.264, A:M.272, A:D.278
CA.17: 2 residues within 4Å:- Chain B: K.454, E.469
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:K.454, B:E.469, H2O.15, H2O.26, H2O.26
CA.18: 6 residues within 4Å:- Chain B: Y.261, E.264, M.272, T.273, D.278, N.325
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:Y.261, B:E.264, B:M.272, B:D.278, H2O.22
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 13 x NA: SODIUM ION(Non-functional Binders)
NA.8: 8 residues within 4Å:- Chain A: P.206, N.209, D.210, G.211, S.212, M.214
- Chain B: G.614
- Ligands: NA.11
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.209, A:D.210, A:G.211
NA.9: 4 residues within 4Å:- Chain A: F.460, L.461
- Chain B: L.59, D.60
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:D.60, B:D.60, B:R.83, A:L.461
NA.10: 2 residues within 4Å:- Chain A: V.482, L.483
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.483
NA.11: 6 residues within 4Å:- Chain A: P.206, V.208, D.210, S.212, T.213
- Ligands: NA.8
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:V.208, A:D.210, A:D.210, A:S.212, A:T.213
- Water bridges: A:T.213
NA.12: 2 residues within 4Å:- Chain A: W.236, I.292
No protein-ligand interaction detected (PLIP)NA.13: 5 residues within 4Å:- Chain A: H.136, V.137, H.138, D.495, A.496
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.137, A:D.495, A:D.495
NA.20: 5 residues within 4Å:- Chain B: R.165, K.170, T.171, D.172, L.517
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.165
NA.21: 3 residues within 4Å:- Chain B: K.290, K.293, A.294
No protein-ligand interaction detected (PLIP)NA.22: 4 residues within 4Å:- Chain B: I.108, R.111, D.172, A.173
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.111
- Water bridges: B:R.111
NA.23: 6 residues within 4Å:- Chain B: N.92, R.93, G.100, I.128, H.129, D.130
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:H.129
NA.24: 7 residues within 4Å:- Chain A: N.131
- Chain B: R.93, C.94, S.95, G.98, Q.101, A.595
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.93, B:R.93, B:S.95, B:G.98, B:A.595
NA.25: 6 residues within 4Å:- Chain B: F.91, H.109, H.129, D.130, N.131, R.160
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.131, B:R.160, B:R.160
NA.26: 1 residues within 4Å:- Chain B: Y.196
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Y.196
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Paraskevopoulos, K. et al., Insight Into Catalysis of Nitrous Oxide Reductase from High-Resolution Structures of Resting and Inhibitor-Bound Enzyme from Achromobacter Cycloclastes. J.Mol.Biol. (2006)
- Release Date
- 2006-08-16
- Peptides
- NITROUS-OXIDE REDUCTASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x CU: COPPER (II) ION(Non-covalent)
- 2 x CUZ: (MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION(Non-covalent)
- 5 x CA: CALCIUM ION(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 13 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Paraskevopoulos, K. et al., Insight Into Catalysis of Nitrous Oxide Reductase from High-Resolution Structures of Resting and Inhibitor-Bound Enzyme from Achromobacter Cycloclastes. J.Mol.Biol. (2006)
- Release Date
- 2006-08-16
- Peptides
- NITROUS-OXIDE REDUCTASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B