- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x CU: COPPER (II) ION(Non-covalent)
- 2 x CUZ: (MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION(Non-covalent)
CUZ.3: 9 residues within 4Å:- Chain A: H.135, H.136, H.184, N.246, H.327, H.382, H.433, H.494
- Ligands: IOD.4
7 PLIP interactions:7 interactions with chain A- Metal complexes: A:H.135, A:H.136, A:H.184, A:H.327, A:H.382, A:H.433, A:H.494
CUZ.45: 9 residues within 4Å:- Chain B: H.135, H.136, H.184, N.246, H.327, H.382, H.433, H.494
- Ligands: IOD.46
7 PLIP interactions:7 interactions with chain B- Metal complexes: B:H.135, B:H.136, B:H.184, B:H.327, B:H.382, B:H.433, B:H.494
- 15 x IOD: IODIDE ION(Non-functional Binders)
IOD.4: 6 residues within 4Å:- Chain A: H.382, G.432, H.433, K.454
- Chain B: F.623
- Ligands: CUZ.3
Ligand excluded by PLIPIOD.37: 3 residues within 4Å:- Chain A: K.116, Q.120
- Chain B: N.612
Ligand excluded by PLIPIOD.40: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPIOD.41: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPIOD.42: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPIOD.46: 6 residues within 4Å:- Chain A: F.623
- Chain B: H.382, G.432, H.433, K.454
- Ligands: CUZ.45
Ligand excluded by PLIPIOD.75: 2 residues within 4Å:- Chain B: Y.196, I.292
Ligand excluded by PLIPIOD.76: 3 residues within 4Å:- Chain B: M.438, S.500, S.502
Ligand excluded by PLIPIOD.77: 3 residues within 4Å:- Chain B: V.221, K.239, R.309
Ligand excluded by PLIPIOD.78: 3 residues within 4Å:- Chain B: R.508, S.509, V.510
Ligand excluded by PLIPIOD.79: 4 residues within 4Å:- Chain A: K.181
- Chain B: G.590, Y.616, W.617
Ligand excluded by PLIPIOD.80: 5 residues within 4Å:- Chain B: E.373, P.374, A.409, Y.413
- Ligands: NA.84
Ligand excluded by PLIPIOD.85: 1 residues within 4Å:- Chain A: F.396
Ligand excluded by PLIPIOD.86: 1 residues within 4Å:- Chain B: V.553
Ligand excluded by PLIPIOD.87: 1 residues within 4Å:- Chain B: K.403
Ligand excluded by PLIP- 28 x CA: CALCIUM ION(Non-covalent)
CA.5: 2 residues within 4Å:- Chain A: K.454, E.469
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:K.454, A:E.469, H2O.310, H2O.325, H2O.823
CA.6: 5 residues within 4Å:- Chain A: Y.261, E.264, M.272, D.278, N.325
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.264, A:E.264, A:M.272, A:D.278, A:D.278
CA.7: 1 residues within 4Å:- Chain A: D.362
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:D.362
CA.8: 4 residues within 4Å:- Chain A: E.373, P.374, A.409, Y.413
No protein-ligand interaction detected (PLIP)CA.9: 6 residues within 4Å:- Chain A: F.91, H.109, H.129, D.130, N.131, R.160
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:F.91, A:H.129
CA.10: 7 residues within 4Å:- Chain A: Y.251, M.331, A.332, P.333, G.439, E.440, T.441
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:Y.251, A:M.331, A:G.439
CA.11: 5 residues within 4Å:- Chain A: E.252, K.254, W.255, V.353, T.354
No protein-ligand interaction detected (PLIP)CA.12: 7 residues within 4Å:- Chain A: R.93, C.94, S.95, G.98, Q.101, A.595
- Chain B: N.131
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:S.95, A:A.595
CA.13: 5 residues within 4Å:- Chain A: P.555, S.556, E.630, M.631
- Chain B: L.269
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:S.556, A:E.630, H2O.375, H2O.378, H2O.577
CA.14: 4 residues within 4Å:- Chain A: K.145, Y.146, M.438, T.441
No protein-ligand interaction detected (PLIP)CA.15: 5 residues within 4Å:- Chain A: V.88, P.89, W.99, K.170, T.171
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:P.89
CA.16: 6 residues within 4Å:- Chain A: V.54, A.55, P.56, K.58, R.83
- Ligands: CA.51
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:A.55, H2O.741
CA.17: 4 residues within 4Å:- Chain A: R.187, P.188, K.190, D.248
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:P.188, H2O.82
CA.18: 6 residues within 4Å:- Chain A: I.108, H.109, R.111, T.112, I.174
- Ligands: NA.29
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:H.109, A:T.112, A:I.174
CA.19: 4 residues within 4Å:- Chain A: L.121, N.124, K.126
- Chain B: H.592
No protein-ligand interaction detected (PLIP)CA.20: 4 residues within 4Å:- Chain A: G.590, Y.616, W.617
- Chain B: K.181
No protein-ligand interaction detected (PLIP)CA.38: 2 residues within 4Å:- Chain A: N.612
- Chain B: K.116
No protein-ligand interaction detected (PLIP)CA.47: 2 residues within 4Å:- Chain B: K.454, E.469
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:K.454, B:E.469, H2O.402, H2O.403, H2O.744
CA.48: 5 residues within 4Å:- Chain B: Y.261, E.264, M.272, D.278, N.325
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:Y.261, B:E.264, B:M.272, B:D.278, H2O.624
CA.49: 5 residues within 4Å:- Chain A: R.93, S.95
- Chain B: N.92, R.93, D.130
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Metal complexes: B:D.130, A:R.93
CA.50: 4 residues within 4Å:- Chain B: S.456, K.457, F.460, K.467
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:S.456, B:K.457, H2O.718
CA.51: 7 residues within 4Å:- Chain A: V.54, A.55, P.56, R.83
- Chain B: H.485, D.486
- Ligands: CA.16
No protein-ligand interaction detected (PLIP)CA.52: 6 residues within 4Å:- Chain A: Q.621
- Chain B: G.69, Q.70, D.133, H.135, H.494
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.133, B:H.494, H2O.493
CA.53: 5 residues within 4Å:- Chain B: H.138, M.139, Y.146, E.440, I.497
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.138, B:Y.146, H2O.496
CA.54: 2 residues within 4Å:- Chain B: R.107, I.108
No protein-ligand interaction detected (PLIP)CA.55: 2 residues within 4Å:- Chain B: G.387, G.389
No protein-ligand interaction detected (PLIP)CA.56: 5 residues within 4Å:- Chain A: H.592
- Chain B: Q.120, L.121, N.124, K.126
No protein-ligand interaction detected (PLIP)CA.81: 1 residues within 4Å:- Chain B: A.358
No protein-ligand interaction detected (PLIP)- 8 x CL: CHLORIDE ION(Non-functional Binders)
CL.21: 6 residues within 4Å:- Chain A: R.187, N.246, G.328, C.329, N.330, H.382
Ligand excluded by PLIPCL.22: 5 residues within 4Å:- Chain A: K.126, H.129, D.130, N.131
- Chain B: G.593
Ligand excluded by PLIPCL.23: 4 residues within 4Å:- Chain A: Q.101, N.103, V.606, T.607
Ligand excluded by PLIPCL.57: 6 residues within 4Å:- Chain B: R.187, N.246, G.328, C.329, N.330, H.382
Ligand excluded by PLIPCL.58: 3 residues within 4Å:- Chain B: K.116, K.181, N.209
Ligand excluded by PLIPCL.59: 5 residues within 4Å:- Chain A: G.593
- Chain B: K.126, H.129, D.130, N.131
Ligand excluded by PLIPCL.60: 2 residues within 4Å:- Chain B: R.318, Y.319
Ligand excluded by PLIPCL.82: 1 residues within 4Å:- Chain B: A.123
Ligand excluded by PLIP- 30 x NA: SODIUM ION(Non-functional Binders)
NA.24: 7 residues within 4Å:- Chain A: N.209, D.210, G.211, S.212, M.214
- Chain B: G.614
- Ligands: NA.26
Ligand excluded by PLIPNA.25: 3 residues within 4Å:- Chain A: L.425, V.482, L.483
Ligand excluded by PLIPNA.26: 7 residues within 4Å:- Chain A: P.206, V.208, D.210, S.212, T.213, M.214
- Ligands: NA.24
Ligand excluded by PLIPNA.27: 2 residues within 4Å:- Chain A: N.103, E.520
Ligand excluded by PLIPNA.28: 6 residues within 4Å:- Chain A: A.384, F.385, K.435, T.436, G.439, E.440
Ligand excluded by PLIPNA.29: 5 residues within 4Å:- Chain A: I.108, R.111, A.173, I.174
- Ligands: CA.18
Ligand excluded by PLIPNA.30: 5 residues within 4Å:- Chain A: S.140, R.149, R.193, S.194, A.229
Ligand excluded by PLIPNA.31: 4 residues within 4Å:- Chain A: T.102, E.104, Q.602, S.604
Ligand excluded by PLIPNA.32: 2 residues within 4Å:- Chain A: N.612, P.613
Ligand excluded by PLIPNA.33: 1 residues within 4Å:- Chain A: V.530
Ligand excluded by PLIPNA.34: 7 residues within 4Å:- Chain A: Y.146, K.435, T.436, M.438, G.439, I.497, A.498
Ligand excluded by PLIPNA.35: 3 residues within 4Å:- Chain A: V.221, K.239, R.309
Ligand excluded by PLIPNA.36: 3 residues within 4Å:- Chain A: R.508, S.509, V.510
Ligand excluded by PLIPNA.39: 1 residues within 4Å:- Chain A: K.403
Ligand excluded by PLIPNA.61: 3 residues within 4Å:- Chain B: K.290, K.293, A.294
Ligand excluded by PLIPNA.62: 5 residues within 4Å:- Chain B: R.93, G.100, I.128, H.129, D.130
Ligand excluded by PLIPNA.63: 7 residues within 4Å:- Chain A: N.131
- Chain B: R.93, C.94, S.95, G.98, Q.101, A.595
Ligand excluded by PLIPNA.64: 5 residues within 4Å:- Chain A: F.460, L.461
- Chain B: L.59, D.60, R.83
Ligand excluded by PLIPNA.65: 2 residues within 4Å:- Chain B: P.192, R.193
Ligand excluded by PLIPNA.66: 2 residues within 4Å:- Chain B: F.396, Q.430
Ligand excluded by PLIPNA.67: 2 residues within 4Å:- Chain B: P.366, R.367
Ligand excluded by PLIPNA.68: 3 residues within 4Å:- Chain B: R.149, C.166, D.167
Ligand excluded by PLIPNA.69: 4 residues within 4Å:- Chain B: E.252, K.254, W.255, V.353
Ligand excluded by PLIPNA.70: 6 residues within 4Å:- Chain B: P.206, V.208, D.210, S.212, T.213, M.214
Ligand excluded by PLIPNA.71: 8 residues within 4Å:- Chain B: A.180, I.183, C.199, N.200, G.201, I.223, F.224, T.225
Ligand excluded by PLIPNA.72: 1 residues within 4Å:- Chain B: A.294
Ligand excluded by PLIPNA.73: 6 residues within 4Å:- Chain B: I.108, H.109, Q.110, R.111, T.112, I.174
Ligand excluded by PLIPNA.74: 6 residues within 4Å:- Chain B: K.145, Y.146, M.438, T.441, D.443, I.503
Ligand excluded by PLIPNA.83: 1 residues within 4Å:- Chain B: A.611
Ligand excluded by PLIPNA.84: 1 residues within 4Å:- Ligands: IOD.80
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Paraskevopoulos, K. et al., Insight Into Catalysis of Nitrous Oxide Reductase from High-Resolution Structures of Resting and Inhibitor-Bound Enzyme from Achromobacter Cycloclastes. J.Mol.Biol. (2006)
- Release Date
- 2006-08-16
- Peptides
- NITROUS OXIDE REDUCTASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x CU: COPPER (II) ION(Non-covalent)
- 2 x CUZ: (MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION(Non-covalent)
- 15 x IOD: IODIDE ION(Non-functional Binders)
- 28 x CA: CALCIUM ION(Non-covalent)
- 8 x CL: CHLORIDE ION(Non-functional Binders)
- 30 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Paraskevopoulos, K. et al., Insight Into Catalysis of Nitrous Oxide Reductase from High-Resolution Structures of Resting and Inhibitor-Bound Enzyme from Achromobacter Cycloclastes. J.Mol.Biol. (2006)
- Release Date
- 2006-08-16
- Peptides
- NITROUS OXIDE REDUCTASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B